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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:442.5 nTPM
HPA:442.5 nTPM
GTEx:620.7 nTPM
FANTOM5:621.7 Scaled Tags Per Million
Pig:218.3 nTPM
Mouse:494.5 nTPM
Allen mouse:20.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 442.5
Sample id Sample description nTPM
Amygdala
nTPM: 442.5
2814 Male, age 76, right hemisphere 468.3
2514 Male, age 75, right hemisphere 460.4
1987 Female, age 91, left hemisphere 445.4
2695 Female, age 67, right hemisphere 434.3
2517 Female, age 94, left hemisphere 404.0
Basal amygdala
nTPM: 411.2
1955 Male, age 76, both hemispheres 432.9
2110 Male, age 80, left hemisphere 431.1
2243 Female, age 91, right hemisphere 429.4
2609 Male, age 75, right hemisphere 425.2
2685 Female, age 94, left hemisphere 396.2
2827 Female, age 67, right hemisphere 352.2
Central amygdala
nTPM: 421.3
1905 Male, age 76, both hemispheres 455.6
2239 Male, age 80, left hemisphere 427.4
2515 Male, age 75, right hemisphere 420.7
2701 Female, age 91, right hemisphere 407.8
2826 Female, age 94, left hemisphere 395.1
Corticomedial amygdala
nTPM: 421.0
2829 Male, age 80, left hemisphere 445.4
2240 Male, age 76, both hemispheres 440.2
2242 Female, age 91, right hemisphere 437.5
2428 Male, age 75, right hemisphere 427.0
2429 Female, age 94, left hemisphere 419.2
2535 Female, age 67, right hemisphere 356.9
Lateral amygdala
nTPM: 399.8
1883 Male, age 76, both hemispheres 451.9
2516 Male, age 75, right hemisphere 433.5
2534 Female, age 94, left hemisphere 399.7
2256 Male, age 80, left hemisphere 381.3
2255 Female, age 91, right hemisphere 370.1
2830 Female, age 67, right hemisphere 362.5
Stria terminalis, bed nucleus
nTPM: 439.7
1974 Female, age 91, both hemispheres 477.6
2486 Female, age 94, both hemispheres 431.0
2201 Male, age 74, unknown 410.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 620.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 620.7
Samples: 152

Max nTPM: 1593.0
Min nTPM: 356.9
Std nTPM: 197.7
Median nTPM: 576.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1593.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1518.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1360.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1103.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1101.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1070.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1065.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1034.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 997.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 964.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 923.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 907.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 880.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 862.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 861.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 845.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 828.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 823.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 795.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 786.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 780.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 761.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 757.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 755.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 748.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 737.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 733.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 732.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 730.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 708.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 697.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 693.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 691.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 689.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 688.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 682.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 681.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 679.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 679.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 677.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 675.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 673.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 672.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 669.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 668.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 662.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 661.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 660.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 654.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 652.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 651.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 650.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 649.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 643.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 640.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 635.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 635.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 635.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 619.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 617.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 615.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 614.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 613.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 613.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 610.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 608.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 606.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 593.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 592.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 591.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 590.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 588.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 586.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 582.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 581.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 578.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 575.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 573.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 571.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 571.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 571.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 568.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 565.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 564.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 559.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 558.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 557.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 552.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 550.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 549.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 547.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 542.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 542.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 539.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 538.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 530.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 524.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 522.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 522.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 520.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 519.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 518.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 514.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 514.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 509.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 506.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 503.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 503.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 503.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 502.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 498.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 495.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 494.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 494.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 493.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 491.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 489.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 488.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 483.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 480.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 479.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 478.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 473.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 472.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 471.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 470.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 470.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 469.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 468.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 463.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 458.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 447.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 443.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 442.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 439.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 433.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 433.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 432.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 429.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 428.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 423.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 421.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 418.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 414.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 413.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 407.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 404.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 390.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 387.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 386.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 367.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 356.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 621.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 621.7
FF:10151-102I7 76 years, female 621.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 218.3
Pig sample Sample description nTPM
Amygdala
nTPM: 218.3
Samples: 4

Max nTPM: 280.9
Min nTPM: 176.3
Sample A Female 280.9
Sample B Female 235.5
Sample C Male 180.3
Sample D Male 176.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 494.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 494.6
Samples: 4

Max nTPM: 518.9
Min nTPM: 483.0
Sample A Male 484.3
Sample B Male 518.9
Sample C Female 483.0
Sample D Female 492.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.8
73573175 Antisense, RP_051121_03_D09, Mouse strain C57BL/6J (56 days, male) 20.8

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