MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:457.1 nTPM
HPA:457.1 nTPM
GTEx:715.4 nTPM
FANTOM5:651.6 Scaled Tags Per Million
Pig:348.1 nTPM
Mouse:572.2 nTPM
Allen mouse:14.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 457.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 415.4
2019 Male, age 18, unknown 446.4
1870 Female, age 42, unknown 444.7
2411 Female, age 72, unknown 437.2
1827 Male, age 72, unknown 434.7
2828 Female, age 72, unknown 413.4
1833 Male, age 53, unknown 413.0
2219 Male, age 76, both hemispheres 410.8
1830 Male, age 51, unknown 410.5
2666 Male, age 74, left hemisphere 378.9
2586 Male, age 75, left hemisphere 365.0
Dorsal raphe nucleus
nTPM: 444.3
2298 Female, age 72, unknown 479.4
1828 Male, age 53, unknown 443.0
2750 Male, age 76, both hemispheres 442.0
2047 Male, age 72, unknown 436.3
2016 Female, age 72, unknown 420.7
Inferior colliculus
nTPM: 434.2
2097 Female, age 72, unknown 465.9
1890 Male, age 53, unknown 430.7
1848 Female, age 42, unknown 421.0
2849 Male, age 72, unknown 419.3
Median raphe nucleus
nTPM: 449.2
2220 Male, age 76, midline 449.2
Pedunculopontine tegmental nucleus
nTPM: 457.1
2334 Male, age 80, both hemispheres 466.2
1921 Female, age 85, both hemispheres 454.6
2338 Male, age 61, both hemispheres 450.4
Periaquaductal grey, anterior
nTPM: 432.7
1947 Male, age 18, unknown 442.5
2502 Female, age 75, unknown 440.4
1795 Male, age 51, unknown 415.2
Periaquaductal grey, dorsal
nTPM: 425.5
2850 Male, age 76, both hemispheres 456.3
1840 Male, age 53, unknown 429.7
1831 Male, age 72, unknown 414.6
2464 Female, age 72, unknown 401.3
Periaquaductal grey, lateral
nTPM: 429.5
2272 Male, age 74, both hemispheres 447.7
2140 Male, age 76, both hemispheres 427.5
2053 Male, age 18, unknown 413.4
Pretectal area
nTPM: 455.6
1944 Female, age 72, unknown 485.7
2273 Male, age 74, both hemispheres 481.6
1817 Female, age 42, unknown 477.3
2667 Female, age 75, unknown 475.0
1816 Male, age 51, unknown 474.5
2224 Female, age 72, unknown 463.4
2007 Male, age 72, unknown 459.2
1815 Male, age 53, unknown 452.5
2825 Male, age 18, unknown 422.7
2316 Male, age 76, right hemisphere 412.3
2407 Male, age 75, both hemispheres 407.6
Red nucleus
nTPM: 428.7
1821 Female, age 72, unknown 466.5
2725 Female, age 75, unknown 456.3
1954 Female, age 42, unknown 443.0
2823 Male, age 76, right hemisphere 436.8
2503 Female, age 72, unknown 436.1
2785 Male, age 18, unknown 435.0
1865 Male, age 51, unknown 431.8
1904 Male, age 53, unknown 425.5
2227 Male, age 72, unknown 418.0
2769 Male, age 72, unknown 415.1
2588 Male, age 74, left hemisphere 394.5
2584 Male, age 75, left hemisphere 385.7
Substantia nigra
nTPM: 451.0
2241 Male, age 72, unknown 512.9
1889 Female, age 72, unknown 480.1
1916 Female, age 42, unknown 478.3
2409 Female, age 72, unknown 464.5
1851 Male, age 51, unknown 461.6
1941 Male, age 53, unknown 452.4
2699 Male, age 18, unknown 435.6
2665 Male, age 74, both hemispheres 415.6
2590 Female, age 75, unknown 413.6
2583 Male, age 75, right hemisphere 395.3
Superior colliculus
nTPM: 428.5
2587 Male, age 74, left hemisphere 469.3
2087 Female, age 72, unknown 454.2
1796 Male, age 53, unknown 442.7
2261 Male, age 18, unknown 433.3
1913 Female, age 42, unknown 430.9
1895 Male, age 76, right hemisphere 430.3
1839 Male, age 51, unknown 420.4
2668 Female, age 75, unknown 409.5
1995 Male, age 72, unknown 404.7
2664 Male, age 75, both hemispheres 389.5
Ventral tegmental area
nTPM: 447.9
1915 Female, age 42, unknown 466.7
2410 Female, age 72, unknown 454.4
2218 Male, age 76, both hemispheres 454.2
2223 Female, age 72, unknown 444.9
1942 Male, age 51, unknown 440.1
2021 Male, age 53, unknown 427.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 715.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 715.4
Samples: 139

Max nTPM: 1113.2
Min nTPM: 435.8
Std nTPM: 133.9
Median nTPM: 690.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1113.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1064.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1037.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 998.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 980.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 968.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 955.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 953.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 945.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 920.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 908.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 651.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 651.6
FF:10158-103A5 76 years, female 651.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 348.1
Pig sample Sample description nTPM
Midbrain
nTPM: 348.1
Samples: 4

Max nTPM: 435.1
Min nTPM: 298.1
Sample A Female 435.1
Sample B Female 319.3
Sample C Male 339.9
Sample D Male 298.1
Periaqueductal gray
nTPM: 254.2
Samples: 3

Max nTPM: 262.3
Min nTPM: 243.8
Sample B Female 256.5
Sample C Male 262.3
Sample D Male 243.8
Substantia nigra
nTPM: 294.9
Samples: 4

Max nTPM: 380.4
Min nTPM: 253.0
Sample A Female 380.4
Sample B Female 255.1
Sample C Male 291.0
Sample D Male 253.0
Superior colliculi
nTPM: 321.0
Samples: 4

Max nTPM: 360.5
Min nTPM: 248.9
Sample A Female 360.5
Sample B Female 248.9
Sample C Male 357.2
Sample D Male 317.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 572.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 572.2
Samples: 4

Max nTPM: 578.2
Min nTPM: 558.9
Sample A Male 573.7
Sample B Male 578.2
Sample C Female 577.9
Sample D Female 558.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.4
73573175 Antisense, RP_051121_03_D09, Mouse strain C57BL/6J (56 days, male) 14.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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