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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:494.4 nTPM
HPA:494.4 nTPM
GTEx:711.9 nTPM
FANTOM5:905.8 Scaled Tags Per Million
Pig:337.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 494.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 454.8
1981 Female, age 72, midline 525.2
2048 Male, age 55, midline 471.0
2194 Female, age 79, both hemispheres 431.4
2816 Male, age 47, midline 424.9
2565 Male, age 75, midline 421.4
Cervical spinal cord, dorsal horn
nTPM: 494.4
2173 Female, age 72, unknown 558.7
2296 Male, age 66, both hemispheres 558.3
2069 Male, age 47, both hemispheres 523.5
1877 Male, age 55, unknown 459.0
2297 Male, age 75, both hemispheres 444.9
2721 Male, age 90, both hemispheres 421.9
Cervical spinal cord, ventral horn
nTPM: 463.0
2098 Female, age 72, unknown 545.8
2480 Male, age 75, both hemispheres 471.9
2809 Male, age 90, both hemispheres 456.5
2295 Male, age 66, both hemispheres 455.2
2068 Male, age 55, unknown 448.7
2820 Female, age 79, both hemispheres 400.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 711.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 711.9
Samples: 159

Max nTPM: 1234.3
Min nTPM: 430.0
Std nTPM: 137.0
Median nTPM: 700.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1234.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1063.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1027.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1008.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1005.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 985.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 973.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 962.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 954.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 939.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 938.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 936.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 922.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 904.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 903.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 884.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 882.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 870.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 868.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 858.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 848.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 844.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 843.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 838.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 835.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 834.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 833.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 832.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 832.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 829.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 827.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 819.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 812.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 812.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 811.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 810.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 805.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 805.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 802.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 796.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 795.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 794.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 793.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 792.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 788.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 787.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 785.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 774.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 772.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 771.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 770.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 768.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 766.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 765.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 765.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 764.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 762.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 759.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 750.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 743.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 742.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 740.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 734.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 734.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 732.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 730.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 730.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 728.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 727.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 722.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 722.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 721.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 712.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 711.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 710.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 708.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 707.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 704.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 702.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 700.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 700.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 693.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 693.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 690.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 689.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 688.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 687.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 685.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 684.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 684.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 684.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 683.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 683.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 679.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 677.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 676.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 674.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 671.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 669.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 668.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 666.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 663.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 661.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 658.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 656.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 656.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 655.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 650.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 649.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 645.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 637.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 637.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 634.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 633.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 629.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 626.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 620.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 619.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 617.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 616.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 612.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 609.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 609.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 607.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 598.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 595.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 584.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 584.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 583.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 580.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 578.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 576.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 576.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 570.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 560.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 560.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 560.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 555.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 550.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 548.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 546.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 540.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 538.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 537.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 533.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 532.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 526.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 516.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 515.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 514.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 500.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 497.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 494.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 493.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 474.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 469.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 469.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 462.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 430.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 905.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 905.8
FF:10181-103D1 60 years, female 1100.4
FF:10159-103A6 76 years, female 711.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 337.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 325.3
Samples: 4

Max nTPM: 366.7
Min nTPM: 300.4
Sample A Female 319.0
Sample B Female 366.7
Sample C Male 315.2
Sample D Male 300.4
Ventral spinal cord
nTPM: 337.1
Samples: 4

Max nTPM: 376.7
Min nTPM: 303.6
Sample A Female 305.3
Sample B Female 362.7
Sample C Male 303.6
Sample D Male 376.7

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