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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:484.3 nTPM
GTEx:484.3 nTPM
FANTOM5:517.7 Scaled Tags Per Million
Pig:130.2 nTPM
Mouse:369.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 484.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 484.3
Samples: 105

Max nTPM: 720.1
Min nTPM: 349.9
Std nTPM: 67.9
Median nTPM:
413_1 59 years, female 720.1
491_1 89 years, female 691.8
501_1 88 years, male 649.6
490_1 67 years, female 648.9
414_1 84 years, female 593.9
162_1 79 years, female 578.2
149_1 88 years, male 574.0
415_1 77 years, female 562.1
466_1 57 years, female 554.7
81_1 67 years, male 554.5
142_1 61 years, female 553.1
495_1 57 years, female 552.9
145_1 84 years, male 551.4
313_1 79 years, female 550.1
126_1 63 years, male 549.5
384_1 83 years, male 547.3
153_1 70 years, female 545.5
42_1 85 years, male 543.9
396_1 62 years, male 543.0
308_1 70 years, female 540.2
452_1 88 years, female 540.0
265_1 87 years, male 539.9
35_1 74 years, female 539.6
315_1 62 years, female 538.8
17_1 71 years, male 531.7
288_1 66 years, female 530.8
322_1 76 years, male 526.7
324_1 76 years, male 520.1
375_1 74 years, female 518.2
379_1 60 years, male 518.2
18_1 88 years, male 516.6
377_1 82 years, female 515.3
89_1 63 years, male 514.2
237_1 82 years, male 513.4
217_1 76 years, male 506.7
120_1 70 years, female 503.9
254_1 77 years, female 502.9
137_1 83 years, male 501.6
229_1 69 years, female 501.3
117_1 61 years, male 501.2
139_1 64 years, female 500.6
264_1 73 years, female 500.5
43_1 64 years, female 498.5
518_1 75 years, female 498.2
506_1 65 years, male 497.7
307_1 66 years, female 494.5
115_1 83 years, male 492.5
389_1 86 years, female 491.3
119_1 70 years, female 490.9
4_1 88 years, female 490.2
348_1 84 years, male 487.5
526_1 61 years, male 487.2
189_1 76 years, male 483.5
32_1 67 years, male 482.3
386_1 76 years, male 479.4
376_1 75 years, female 479.2
41_1 94 years, female 478.0
109_1 81 years, female 478.0
9_1 66 years, female 475.5
447_1 81 years, male 472.1
404_1 82 years, female 471.7
2_1 77 years, female 470.2
246_1 77 years, male 468.4
468_1 89 years, male 467.4
347_1 72 years, male 465.1
173_1 67 years, male 464.6
316_1 62 years, male 462.0
321_1 62 years, female 461.7
243_1 75 years, male 461.5
266_1 85 years, male 458.2
480_1 63 years, male 457.5
311_1 78 years, male 453.7
286_1 68 years, female 453.5
351_1 91 years, male 451.7
251_1 78 years, male 450.3
99_1 64 years, male 447.4
394_1 75 years, female 441.6
319_1 81 years, male 439.1
499_1 55 years, female 437.7
314_1 67 years, male 433.5
6_1 73 years, female 431.5
177_1 74 years, male 431.0
405_1 91 years, male 428.6
295_1 61 years, female 426.7
349_1 83 years, male 423.5
406_1 79 years, male 423.4
320_1 89 years, female 422.1
292_1 71 years, male 419.4
335_1 73 years, female 418.9
354_1 81 years, female 417.3
353_1 82 years, female 413.8
503_1 68 years, male 413.7
425_1 59 years, female 411.9
291_1 76 years, male 409.5
517_1 88 years, male 403.9
172_1 72 years, female 396.3
293_1 68 years, female 392.2
352_1 62 years, male 388.9
355_1 70 years, female 381.1
318_1 68 years, male 365.4
350_1 84 years, female 359.8
317_1 60 years, male 358.0
163_1 78 years, male 355.5
356_1 87 years, female 350.1
218_1 71 years, female 349.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 517.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 517.7
FF:10030-101E3 24-65 years, mixed 517.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 130.2
Pig sample Sample description nTPM
Retina
nTPM: 130.2
Samples: 4

Max nTPM: 140.3
Min nTPM: 119.8
Sample A Female 119.8
Sample B Female 140.3
Sample C Male 136.0
Sample D Male 124.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 369.8
Mouse sample Sample description nTPM
Retina
nTPM: 369.8
Samples: 4

Max nTPM: 383.8
Min nTPM: 342.5
Sample A Male 378.4
Sample B Male 342.5
Sample C Female 383.8
Sample D Female 374.3

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by the Knut & Alice Wallenberg Foundation.