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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:474.2 nTPM
HPA:474.2 nTPM
FANTOM5:875.9 Scaled Tags Per Million
Pig:348.8 nTPM
Allen mouse:11.4 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 474.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 417.1
2188 Female, age 91, both hemispheres 448.0
2090 Male, age 80, both hemispheres 414.5
1984 Male, age 76, both hemispheres 403.0
2301 Female, age 85, both hemispheres 403.0
Dorsal cochlear nucleus
nTPM: 418.1
2802 Male, age 74, right hemisphere 455.5
2187 Female, age 91, both hemispheres 450.8
2058 Male, age 76, both hemispheres 403.7
2378 Male, age 80, both hemispheres 392.3
2370 Male, age 61, both hemispheres 388.1
Dorsal tegmental nucleus
nTPM: 439.2
2326 Male, age 74, both hemispheres 472.7
2083 Male, age 80, both hemispheres 460.1
1936 Male, age 76, left hemisphere 426.9
2358 Male, age 61, both hemispheres 397.1
Dorsolateral tegmental area
nTPM: 439.9
2751 Female, age 85, both hemispheres 467.4
2654 Male, age 80, both hemispheres 453.1
2360 Male, age 74, both hemispheres 444.2
2141 Male, age 76, both hemispheres 423.9
2337 Male, age 61, both hemispheres 410.8
Kolliker-Fuse nucleus
nTPM: 459.4
2163 Male, age 80, both hemispheres 479.4
2315 Male, age 76, right hemisphere 466.1
2793 Female, age 91, left hemisphere 432.7
Lateral lemniscal nuclei
nTPM: 433.7
2169 Male, age 76, both hemispheres 466.6
2746 Female, age 85, left hemisphere 438.1
2036 Male, age 80, both hemispheres 437.7
2453 Male, age 74, right hemisphere 419.3
2320 Female, age 91, left hemisphere 406.6
Lateral parabrachial nucleus
nTPM: 443.4
2139 Female, age 85, right hemisphere 488.1
2792 Male, age 76, both hemispheres 454.4
2013 Male, age 80, both hemispheres 436.9
2790 Male, age 61, both hemispheres 394.3
Lateral vestibular nucleus
nTPM: 440.7
2184 Male, age 76, both hemispheres 452.5
2311 Male, age 80, both hemispheres 429.0
Locus coeruleus
nTPM: 474.2
2788 Male, age 74, unknown 520.7
2123 Female, age 91, both hemispheres 513.5
2014 Male, age 55, unknown 507.7
2720 Male, age 74, both hemispheres 450.7
2317 Female, age 72, unknown 446.5
2162 Male, age 80, both hemispheres 441.5
1980 Male, age 76, both hemispheres 439.0
Medial olivary nucleus
nTPM: 457.5
2138 Female, age 91, both hemispheres 479.2
1943 Male, age 61, both hemispheres 462.7
1962 Male, age 76, both hemispheres 455.1
2851 Male, age 80, both hemispheres 433.1
Medial parabrachial nucleus
nTPM: 438.4
2170 Female, age 91, both hemispheres 477.3
2854 Male, age 80, both hemispheres 467.5
2786 Male, age 76, both hemispheres 424.9
2463 Female, age 85, right hemisphere 417.0
2156 Male, age 61, both hemispheres 405.5
Medial periolivary nuclei
nTPM: 447.8
2791 Male, age 74, right hemisphere 491.4
2171 Female, age 85, both hemispheres 474.7
2063 Male, age 76, both hemispheres 468.0
2081 Male, age 80, both hemispheres 403.0
2458 Female, age 91, both hemispheres 402.1
Motor facial nucleus
nTPM: 438.5
2365 Male, age 74, right hemisphere 484.6
2062 Male, age 76, both hemispheres 466.6
2697 Female, age 85, both hemispheres 441.7
2126 Male, age 61, both hemispheres 429.4
2795 Female, age 91, both hemispheres 414.4
2327 Male, age 80, both hemispheres 394.2
Motor trigeminal nucleus
nTPM: 416.7
2309 Male, age 76, both hemispheres 431.6
2079 Male, age 80, both hemispheres 423.9
2560 Male, age 74, both hemispheres 421.6
2335 Male, age 61, both hemispheres 404.9
2321 Female, age 91, both hemispheres 401.2
Nuclei of the trapezoid body
nTPM: 449.8
2159 Male, age 61, both hemispheres 487.8
1983 Male, age 76, both hemispheres 482.6
2735 Female, age 85, both hemispheres 466.0
2166 Male, age 80, both hemispheres 424.9
2368 Female, age 91, both hemispheres 387.7
Paramedian reticular nucleus
nTPM: 457.7
2050 Female, age 85, both hemispheres 475.9
2052 Male, age 76, both hemispheres 459.1
2057 Male, age 80, both hemispheres 448.0
2313 Male, age 61, both hemispheres 447.7
Pontine nuclei
nTPM: 471.0
2727 Male, age 61, right hemisphere 509.8
1863 Male, age 55, unknown 501.7
2454 Male, age 74, left hemisphere 499.5
2109 Female, age 72, unknown 487.0
2787 Female, age 85, both hemispheres 483.2
1968 Male, age 76, left hemisphere 450.1
2319 Female, age 91, both hemispheres 430.4
2115 Male, age 80, left hemisphere 406.1
Pontine raphe nucleus
nTPM: 464.2
2122 Female, age 85, midline 479.8
2853 Male, age 76, midline 448.6
Posteroventral cochlear nucleus
nTPM: 431.6
2752 Female, age 85, both hemispheres 459.8
2341 Male, age 80, both hemispheres 446.0
2135 Female, age 91, both hemispheres 434.9
2070 Male, age 76, both hemispheres 425.9
2371 Male, age 61, both hemispheres 391.6
Principal sensory trigeminal nucleus
nTPM: 445.3
2158 Male, age 61, both hemispheres 470.0
2008 Male, age 80, left hemisphere 447.2
2324 Male, age 76, both hemispheres 439.2
2367 Female, age 91, left hemisphere 424.9
Reticular pontine nucleus, caudal
nTPM: 438.0
2092 Male, age 76, both hemispheres 472.5
2559 Male, age 74, both hemispheres 454.1
2457 Female, age 91, both hemispheres 417.9
2332 Male, age 80, right hemisphere 407.6
Reticular pontine nucleus, oral
nTPM: 459.2
2361 Male, age 74, both hemispheres 497.5
1939 Male, age 80, both hemispheres 474.4
2012 Female, age 85, both hemispheres 458.2
2167 Male, age 76, both hemispheres 438.8
2366 Female, age 91, both hemispheres 427.2
Reticulotegmental nucleus
nTPM: 425.4
2325 Male, age 76, both hemispheres 437.7
2322 Female, age 91, both hemispheres 426.2
2333 Male, age 80, both hemispheres 420.6
2452 Male, age 74, both hemispheres 417.2
Spinal trigeminal nucleus, oral
nTPM: 432.0
2737 Female, age 85, both hemispheres 451.0
2164 Male, age 80, both hemispheres 428.4
1978 Male, age 76, both hemispheres 416.7
Subcoeruleus area
nTPM: 443.7
1958 Male, age 80, both hemispheres 466.6
2369 Female, age 85, left hemisphere 462.4
2323 Female, age 91, left hemisphere 452.5
2451 Male, age 74, both hemispheres 424.8
2089 Male, age 76, left hemisphere 411.9
Superior olive
nTPM: 446.7
2364 Male, age 74, right hemisphere 495.7
1875 Female, age 85, both hemispheres 488.3
2020 Male, age 76, both hemispheres 443.9
2329 Male, age 80, right hemisphere 411.0
2561 Female, age 91, both hemispheres 394.6
Superior vestibular nucleus
nTPM: 471.4
2383 Male, age 74, both hemispheres 544.0
2015 Male, age 80, both hemispheres 450.4
2061 Male, age 76, both hemispheres 419.9
Ventral periolivary nuclei
nTPM: 442.3
2023 Male, age 76, both hemispheres 464.2
2130 Female, age 85, both hemispheres 460.4
2165 Male, age 80, both hemispheres 453.3
2794 Female, age 91, left hemisphere 391.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 432.1
2840 Female, age 85, both hemispheres 467.2
1959 Male, age 76, both hemispheres 454.6
2449 Male, age 74, both hemispheres 441.3
2359 Male, age 61, both hemispheres 425.3
2161 Male, age 80, both hemispheres 411.9
2456 Female, age 91, both hemispheres 392.5

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 875.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 868.6
FF:10182-103D2 60 years, female 1029.3
FF:10165-103B3 76 years, female 707.9
Pons
Scaled Tags Per Million: 875.9
FF:10033-101E6 18-54 years, mixed 875.9

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 348.8
Pig sample Sample description nTPM
Pons
nTPM: 348.8
Samples: 4

Max nTPM: 394.9
Min nTPM: 271.3
Sample A Female 375.3
Sample B Female 271.3
Sample C Male 353.7
Sample D Male 394.9

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.4
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 11.4
73573175 Antisense, RP_051121_03_D09, Mouse strain C57BL/6J (56 days, male) 11.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.