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RPS25
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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:700.7 nTPM
GTEx:791.0 nTPM
FANTOM5:888.1 Scaled Tags Per Million
Pig:229.8 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 700.7
Sample id Sample description nTPM
Substantia nigra
nTPM: 700.7
2699 Male, age 18, unknown 728.9
1851 Male, age 51, unknown 721.5
2665 Male, age 74, both hemispheres 718.9
2409 Female, age 72, unknown 706.7
2241 Male, age 72, unknown 703.3
1916 Female, age 42, unknown 698.5
2590 Female, age 75, unknown 689.3
1889 Female, age 72, unknown 687.4
1941 Male, age 53, unknown 678.5
2583 Male, age 75, right hemisphere 673.8

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 791.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 791.0
Samples: 139

Max nTPM: 2523.3
Min nTPM: 282.7
Std nTPM: 330.2
Median nTPM: 729.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2523.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2085.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1858.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1740.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1623.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1416.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1349.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1318.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1295.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1278.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1223.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1200.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1198.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1182.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1173.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1164.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1156.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1126.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1054.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1053.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1051.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1023.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1021.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1015.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1005.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 966.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 954.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 951.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 941.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 939.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 932.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 932.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 920.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 912.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 906.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 896.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 893.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 886.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 884.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 880.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 870.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 868.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 867.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 865.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 864.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 847.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 840.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 832.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 831.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 826.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 818.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 818.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 815.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 810.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 805.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 801.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 796.5
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 794.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 792.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 787.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 783.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 774.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 769.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 761.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 755.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 752.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 748.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 741.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 734.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 729.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 728.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 713.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 706.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 698.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 689.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 682.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 680.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 680.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 677.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 676.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 672.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 671.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 671.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 666.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 662.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 657.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 656.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 653.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 651.5
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 640.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 640.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 638.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 635.6
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 635.1
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 633.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 630.6
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 622.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 621.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 620.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 613.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 611.5
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 608.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 607.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 588.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 586.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 571.0
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 568.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 566.5
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 565.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 544.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 543.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 540.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 539.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 539.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 534.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 532.0
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 526.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 515.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 513.5
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 498.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 493.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 484.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 481.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 467.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 465.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 455.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 451.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 442.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 439.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 424.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 418.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 417.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 404.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 390.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 386.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 363.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 353.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 347.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 282.7
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 888.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 888.1
FF:10158-103A5 76 years, female 888.1

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 229.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 229.8
Samples: 4

Max nTPM: 303.2
Min nTPM: 173.7
Sample A Female 303.2
Sample B Female 246.6
Sample C Male 173.7
Sample D Male 195.7

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