We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CLU
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • CLU
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:6730.2 nTPM
HPA:6730.2 nTPM
GTEx:5955.5 nTPM
FANTOM5:5029.9 Scaled Tags Per Million
Pig:2486.5 nTPM
Mouse:1117.1 nTPM
Allen mouse:16.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 6730.2
Sample id Sample description nTPM
Amygdala
nTPM: 6730.2
1987 Female, age 91, left hemisphere 7325.3
2514 Male, age 75, right hemisphere 6731.7
2517 Female, age 94, left hemisphere 6601.8
2814 Male, age 76, right hemisphere 6581.1
2695 Female, age 67, right hemisphere 6411.4
Basal amygdala
nTPM: 6068.2
2243 Female, age 91, right hemisphere 6609.2
1955 Male, age 76, both hemispheres 6363.0
2110 Male, age 80, left hemisphere 6358.3
2609 Male, age 75, right hemisphere 6195.2
2685 Female, age 94, left hemisphere 5926.0
2827 Female, age 67, right hemisphere 4957.4
Central amygdala
nTPM: 6492.8
2515 Male, age 75, right hemisphere 7134.8
1905 Male, age 76, both hemispheres 6656.0
2826 Female, age 94, left hemisphere 6345.2
2239 Male, age 80, left hemisphere 6265.4
2701 Female, age 91, right hemisphere 6062.7
Corticomedial amygdala
nTPM: 6226.6
2242 Female, age 91, right hemisphere 7181.0
2829 Male, age 80, left hemisphere 6412.6
2240 Male, age 76, both hemispheres 6255.7
2428 Male, age 75, right hemisphere 6143.9
2429 Female, age 94, left hemisphere 6011.6
2535 Female, age 67, right hemisphere 5354.6
Lateral amygdala
nTPM: 5877.0
1883 Male, age 76, both hemispheres 6284.9
2534 Female, age 94, left hemisphere 6135.7
2256 Male, age 80, left hemisphere 6047.8
2255 Female, age 91, right hemisphere 5986.8
2516 Male, age 75, right hemisphere 5982.1
2830 Female, age 67, right hemisphere 4824.5
Stria terminalis, bed nucleus
nTPM: 6037.9
1974 Female, age 91, both hemispheres 6238.3
2486 Female, age 94, both hemispheres 5971.8
2201 Male, age 74, unknown 5903.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 5955.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 5955.5
Samples: 152

Max nTPM: 22245.7
Min nTPM: 254.3
Std nTPM: 3139.1
Median nTPM: 5538.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 22245.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 15343.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 14631.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 14607.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 13019.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 11872.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 11222.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 11206.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 10928.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 10863.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 10811.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 10646.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 10447.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 10361.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 10100.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 9955.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 9586.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 9453.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 9184.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 9121.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 9100.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 8522.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 8462.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 8397.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 8378.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 8297.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 8162.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 8100.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 8001.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 7990.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 7755.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 7698.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 7666.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 7637.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 7471.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 7460.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 7455.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 7449.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 7358.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 7352.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 7331.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 7313.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 7299.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 7241.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 7232.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 7141.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 7113.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 7035.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 6970.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 6962.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 6952.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 6835.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 6768.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 6743.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 6683.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 6593.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 6545.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 6394.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 6394.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 6357.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 6322.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 6233.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 6174.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 6117.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 6061.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 5984.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 5975.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 5868.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 5860.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 5817.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 5761.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 5685.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 5650.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 5632.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 5618.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 5565.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 5512.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 5490.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 5467.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 5447.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5437.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 5423.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 5279.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 5260.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 5254.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 5241.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 5236.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 5230.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 5200.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 5162.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 5107.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 5066.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 5066.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 5010.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 5002.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 4953.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 4907.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 4814.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 4778.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 4719.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 4692.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 4620.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 4542.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 4419.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 4409.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 4364.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 4322.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 4130.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 3978.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 3975.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 3930.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 3850.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 3757.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3755.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 3682.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 3623.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 3583.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 3565.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 3550.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 3403.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 3383.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 3352.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 3155.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 3151.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 3114.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3095.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 3030.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2971.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2938.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2899.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2879.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2870.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2802.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 2624.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2521.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2483.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2457.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2405.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2396.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2373.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2304.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2179.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 2113.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1916.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1750.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1565.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1431.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1181.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1155.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1065.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 601.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 254.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 5029.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 5029.9
FF:10151-102I7 76 years, female 5029.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2486.5
Pig sample Sample description nTPM
Amygdala
nTPM: 2486.5
Samples: 4

Max nTPM: 2776.8
Min nTPM: 2203.4
Sample A Female 2776.8
Sample B Female 2391.1
Sample C Male 2574.5
Sample D Male 2203.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1117.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1117.2
Samples: 4

Max nTPM: 1243.9
Min nTPM: 998.0
Sample A Male 998.0
Sample B Male 1047.8
Sample C Female 1243.9
Sample D Female 1178.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 16.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.4
77800883 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 23.5
79490114 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 18.6
276 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 9.3
275 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 4.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.