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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:3274.6 nTPM
GTEx:3274.6 nTPM
FANTOM5:3790.9 Scaled Tags Per Million
Pig:573.9 nTPM
Mouse:983.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3274.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 3274.6
Samples: 105

Max nTPM: 6275.5
Min nTPM: 1704.2
Std nTPM: 825.1
Median nTPM:
452_1 88 years, female 6275.5
264_1 73 years, female 4971.5
384_1 83 years, male 4822.1
351_1 91 years, male 4668.9
375_1 74 years, female 4613.5
189_1 76 years, male 4607.8
237_1 82 years, male 4599.9
506_1 65 years, male 4519.5
42_1 85 years, male 4452.9
99_1 64 years, male 4437.1
349_1 83 years, male 4409.7
295_1 61 years, female 4376.8
406_1 79 years, male 4320.8
4_1 88 years, female 4318.3
354_1 81 years, female 4317.7
480_1 63 years, male 4238.6
394_1 75 years, female 4110.2
173_1 67 years, male 4096.9
319_1 81 years, male 4080.9
308_1 70 years, female 4074.6
376_1 75 years, female 4016.7
501_1 88 years, male 3977.0
17_1 71 years, male 3940.5
377_1 82 years, female 3877.1
254_1 77 years, female 3849.0
177_1 74 years, male 3848.1
526_1 61 years, male 3826.0
389_1 86 years, female 3823.8
353_1 82 years, female 3819.2
137_1 83 years, male 3781.0
396_1 62 years, male 3762.7
379_1 60 years, male 3731.0
347_1 72 years, male 3690.6
288_1 66 years, female 3558.9
117_1 61 years, male 3550.7
322_1 76 years, male 3539.9
356_1 87 years, female 3538.0
348_1 84 years, male 3519.0
414_1 84 years, female 3470.5
229_1 69 years, female 3464.0
313_1 79 years, female 3431.7
447_1 81 years, male 3430.9
320_1 89 years, female 3382.6
145_1 84 years, male 3337.9
243_1 75 years, male 3299.2
405_1 91 years, male 3293.7
142_1 61 years, female 3281.6
109_1 81 years, female 3277.2
265_1 87 years, male 3262.2
35_1 74 years, female 3238.8
9_1 66 years, female 3232.1
386_1 76 years, male 3222.0
115_1 83 years, male 3213.4
41_1 94 years, female 3208.7
163_1 78 years, male 3185.8
120_1 70 years, female 3130.4
350_1 84 years, female 3121.5
316_1 62 years, male 3110.6
352_1 62 years, male 3096.2
425_1 59 years, female 3092.8
251_1 78 years, male 3054.4
355_1 70 years, female 3007.7
119_1 70 years, female 3001.5
404_1 82 years, female 2998.8
286_1 68 years, female 2982.4
291_1 76 years, male 2976.8
518_1 75 years, female 2958.3
126_1 63 years, male 2936.7
162_1 79 years, female 2899.0
217_1 76 years, male 2893.0
321_1 62 years, female 2880.7
172_1 72 years, female 2867.7
315_1 62 years, female 2859.4
314_1 67 years, male 2857.2
335_1 73 years, female 2779.9
6_1 73 years, female 2755.5
81_1 67 years, male 2745.6
266_1 85 years, male 2743.5
317_1 60 years, male 2737.8
18_1 88 years, male 2712.7
292_1 71 years, male 2688.7
324_1 76 years, male 2686.5
503_1 68 years, male 2661.9
153_1 70 years, female 2658.1
499_1 55 years, female 2587.5
517_1 88 years, male 2562.9
307_1 66 years, female 2425.8
318_1 68 years, male 2424.2
413_1 59 years, female 2422.9
218_1 71 years, female 2422.2
415_1 77 years, female 2364.3
293_1 68 years, female 2316.8
468_1 89 years, male 2294.9
2_1 77 years, female 2213.7
246_1 77 years, male 2212.0
311_1 78 years, male 2156.7
139_1 64 years, female 2155.0
491_1 89 years, female 2093.6
43_1 64 years, female 1948.4
495_1 57 years, female 1939.9
89_1 63 years, male 1928.9
149_1 88 years, male 1920.9
32_1 67 years, male 1857.9
490_1 67 years, female 1786.4
466_1 57 years, female 1704.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3790.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 3790.9
FF:10030-101E3 24-65 years, mixed 3790.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 573.9
Pig sample Sample description nTPM
Retina
nTPM: 573.9
Samples: 4

Max nTPM: 677.9
Min nTPM: 496.4
Sample A Female 559.3
Sample B Female 561.8
Sample C Male 677.9
Sample D Male 496.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 983.6
Mouse sample Sample description nTPM
Retina
nTPM: 983.6
Samples: 4

Max nTPM: 1072.1
Min nTPM: 865.8
Sample A Male 1065.5
Sample B Male 865.8
Sample C Female 1072.1
Sample D Female 931.0

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by the Knut & Alice Wallenberg Foundation.