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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:8813.6 nTPM
HPA:8813.6 nTPM
GTEx:4209.3 nTPM
FANTOM5:8682.5 Scaled Tags Per Million
Pig:3154.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 8813.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 8813.6
1981 Female, age 72, midline 10022.8
2048 Male, age 55, midline 9579.2
2565 Male, age 75, midline 8639.6
2816 Male, age 47, midline 8343.8
2194 Female, age 79, both hemispheres 7482.5
Cervical spinal cord, dorsal horn
nTPM: 8638.5
2721 Male, age 90, both hemispheres 10649.5
2069 Male, age 47, both hemispheres 8929.1
2296 Male, age 66, both hemispheres 8641.1
2173 Female, age 72, unknown 8388.7
1877 Male, age 55, unknown 7918.8
2297 Male, age 75, both hemispheres 7303.7
Cervical spinal cord, ventral horn
nTPM: 8078.8
2098 Female, age 72, unknown 13864.1
2295 Male, age 66, both hemispheres 7853.3
2809 Male, age 90, both hemispheres 7426.5
2068 Male, age 55, unknown 7038.1
2480 Male, age 75, both hemispheres 6179.7
2820 Female, age 79, both hemispheres 6111.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4209.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 4209.3
Samples: 159

Max nTPM: 19319.3
Min nTPM: 981.3
Std nTPM: 3034.0
Median nTPM: 3247.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 19319.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 14191.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 13279.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 13262.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 13115.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 12817.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 12461.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 10853.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 10580.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 9694.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 9476.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 9280.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 8618.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 8578.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 8291.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 7896.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 7600.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 7546.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 7341.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 7269.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 7260.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 7207.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 6977.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 6912.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 6698.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 6573.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 6542.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 6366.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 6304.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 6275.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 6231.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 6159.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 6045.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 5973.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 5913.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 5801.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 5267.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 5237.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 5226.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 5175.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 5020.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 4981.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 4929.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 4871.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 4860.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 4849.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 4831.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 4731.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 4706.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 4580.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 4565.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 4563.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 4479.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 4391.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 4361.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 4352.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 4319.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 4306.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 4208.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 4167.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 4138.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 4110.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 4009.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 3986.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 3985.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 3919.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 3894.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 3862.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 3810.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 3785.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3644.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 3613.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 3572.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 3567.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 3550.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 3464.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3362.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 3333.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 3300.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 3247.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 3242.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 3169.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 3148.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 3147.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 3121.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 3118.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 3017.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2977.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 2952.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2922.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2878.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2747.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2678.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2631.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2629.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2594.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 2592.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2569.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2538.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2525.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2521.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 2517.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2482.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 2479.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 2471.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2469.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2468.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 2436.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 2394.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 2387.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 2345.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 2308.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 2266.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2251.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2216.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2208.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2165.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2162.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2124.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2104.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2096.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2088.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 2081.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 2016.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 2014.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1995.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1980.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1966.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1956.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1928.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1923.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1904.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1830.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1810.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1808.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1801.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1784.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1741.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1713.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1651.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1614.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1586.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1566.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1543.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1480.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1460.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1441.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1405.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1380.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1351.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1308.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1265.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1264.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1203.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1192.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1161.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1142.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 982.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 981.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 8682.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 8682.5
FF:10159-103A6 76 years, female 8857.8
FF:10181-103D1 60 years, female 8507.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3154.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2238.9
Samples: 4

Max nTPM: 2408.8
Min nTPM: 2160.0
Sample A Female 2188.9
Sample B Female 2197.7
Sample C Male 2408.8
Sample D Male 2160.0
Ventral spinal cord
nTPM: 3154.4
Samples: 4

Max nTPM: 3399.7
Min nTPM: 2695.5
Sample A Female 3399.7
Sample B Female 3185.5
Sample C Male 3336.9
Sample D Male 2695.5

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