We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CLU
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • CLU
BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:10230.8 nTPM
HPA:10230.8 nTPM
FANTOM5:7264.0 Scaled Tags Per Million
Pig:2416.1 nTPM
Allen mouse:13.0 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 10230.8
Sample id Sample description nTPM
Area postrema
nTPM: 10230.8
2799 Male, age 61, both hemispheres 14738.6
2306 Male, age 80, both hemispheres 8278.3
2054 Male, age 76, both hemispheres 7675.6
Cuneate nuclei
nTPM: 6081.8
2376 Male, age 61, both hemispheres 6276.2
2131 Male, age 76, both hemispheres 6110.3
2381 Male, age 80, both hemispheres 5858.8
Dorsal medullary reticular nucleus
nTPM: 6166.8
2040 Female, age 85, both hemispheres 6280.5
2088 Male, age 76, both hemispheres 6227.6
2373 Male, age 61, both hemispheres 5992.4
Dorsal motor vagal complex
nTPM: 7362.3
2797 Male, age 61, both hemispheres 8892.9
2185 Male, age 76, both hemispheres 7774.9
2813 Female, age 72, unknown 7714.1
2000 Male, age 74, unknown 7600.4
2643 Male, age 74, both hemispheres 7146.8
2844 Male, age 55, unknown 6843.6
2133 Female, age 91, both hemispheres 6733.8
2807 Female, age 85, both hemispheres 6192.2
Gigantocellular reticular nuclei, medullary
nTPM: 6083.9
2462 Male, age 74, both hemispheres 7048.3
2314 Male, age 61, both hemispheres 6529.7
1876 Female, age 85, both hemispheres 6306.0
2022 Male, age 76, right hemisphere 5792.2
2387 Female, age 91, both hemispheres 5479.9
2310 Male, age 80, both hemispheres 5347.5
Gigantocellular reticular nuclei, pars
nTPM: 5964.5
2084 Female, age 85, both hemispheres 6412.3
2336 Male, age 61, both hemispheres 6174.2
2168 Male, age 76, both hemispheres 5781.7
2330 Male, age 80, both hemispheres 5753.4
2706 Male, age 80, both hemispheres 5700.8
Inferior olive
nTPM: 7011.4
2085 Female, age 85, both hemispheres 7425.5
2563 Male, age 74, both hemispheres 7245.1
2628 Female, age 91, both hemispheres 6969.6
2178 Male, age 61, both hemispheres 6852.0
2379 Male, age 80, both hemispheres 6564.9
Lateral medullary reticular nucleus
nTPM: 7380.5
2305 Male, age 74, both hemispheres 9240.5
2852 Male, age 80, both hemispheres 7359.1
2374 Male, age 61, both hemispheres 7152.5
2190 Female, age 85, both hemispheres 7045.2
2804 Female, age 91, both hemispheres 6763.7
2044 Male, age 76, both hemispheres 6722.2
Medial vestibular nucleus
nTPM: 6481.4
2134 Male, age 76, both hemispheres 6848.0
2743 Female, age 85, both hemispheres 6827.5
2801 Male, age 74, both hemispheres 6615.5
2624 Male, age 61, both hemispheres 6477.1
2093 Male, age 80, both hemispheres 6201.7
2803 Female, age 91, both hemispheres 5918.6
Motor hypoglossal nucleus
nTPM: 6449.1
2277 Male, age 76, both hemispheres 7292.0
2461 Male, age 61, both hemispheres 7236.8
2125 Female, age 91, both hemispheres 6132.3
2182 Male, age 80, both hemispheres 5883.4
2132 Female, age 85, both hemispheres 5701.2
Nucleus ambiguus
nTPM: 7124.7
2071 Male, age 76, both hemispheres 8367.6
2096 Female, age 85, both hemispheres 5881.7
Nucleus cuneatus
nTPM: 6780.4
2564 Male, age 74, both hemispheres 7712.6
2808 Female, age 85, both hemispheres 7270.6
2562 Male, age 61, both hemispheres 7038.9
2380 Male, age 80, both hemispheres 6864.5
2100 Male, age 76, both hemispheres 6430.5
2805 Female, age 91, both hemispheres 5365.6
Nucleus gracilis
nTPM: 7627.9
2627 Male, age 74, both hemispheres 10498.8
2299 Female, age 85, both hemispheres 6357.0
2382 Male, age 80, both hemispheres 6027.8
Nucleus raphe magnus
nTPM: 5909.6
2051 Male, age 76, both hemispheres 6716.7
2455 Male, age 74, both hemispheres 6639.7
2172 Female, age 85, both hemispheres 5642.5
2328 Male, age 80, both hemispheres 5558.2
2160 Male, age 61, both hemispheres 5525.4
2459 Female, age 91, both hemispheres 5374.9
Nucleus raphe obscurus
nTPM: 7243.5
2142 Male, age 76, midline 9160.8
2800 Male, age 61, midline 6338.3
2845 Female, age 85, midline 6231.6
Nucleus raphe pallidus
nTPM: 8452.0
1924 Male, age 61, midline 11075.2
2145 Male, age 76, midline 7788.1
2183 Male, age 80, midline 6492.6
Nucleus tractus solitarii
nTPM: 6832.9
2144 Female, age 91, right hemisphere 7400.7
2191 Female, age 85, both hemispheres 7209.8
2307 Male, age 80, both hemispheres 6471.8
2656 Male, age 76, both hemispheres 6249.1
Parvicellular reticular nuclei
nTPM: 6078.1
2119 Male, age 80, both hemispheres 6876.0
2095 Male, age 76, both hemispheres 6361.4
2558 Male, age 74, both hemispheres 4997.0
Parvicellular reticular nuclei, medullary
nTPM: 6095.8
2091 Female, age 85, both hemispheres 6250.6
2189 Female, age 91, both hemispheres 6113.3
2181 Male, age 80, left hemisphere 5923.7
Peritrigeminal nucleus
nTPM: 7370.6
2067 Female, age 85, both hemispheres 7857.2
2136 Male, age 76, both hemispheres 7439.7
2179 Male, age 61, both hemispheres 6815.0
Prepositus hypoglossal nucleus
nTPM: 6520.8
2086 Male, age 80, both hemispheres 6798.9
2855 Female, age 85, right hemisphere 6242.7
Spinal trigeminal nucleus, caudal
nTPM: 6331.9
2308 Male, age 80, both hemispheres 6640.0
2642 Male, age 74, both hemispheres 6478.2
2312 Male, age 61, both hemispheres 6438.3
2447 Male, age 76, both hemispheres 6168.9
2390 Female, age 91, both hemispheres 5934.1
Spinal trigeminal nucleus, interpolar
nTPM: 6267.1
2625 Male, age 61, both hemispheres 6956.5
2066 Male, age 76, right hemisphere 6609.6
2033 Male, age 80, both hemispheres 6156.5
2386 Female, age 85, both hemispheres 6006.1
2389 Female, age 91, both hemispheres 5606.8
Spinal vestibular nucleus
nTPM: 6034.2
2748 Male, age 76, both hemispheres 6353.8
2780 Male, age 80, both hemispheres 6256.7
2796 Male, age 61, both hemispheres 6231.8
2806 Female, age 85, both hemispheres 6163.3
2186 Female, age 91, both hemispheres 5940.5
2384 Male, age 74, both hemispheres 5258.9
Ventral medullary reticular nucleus
nTPM: 6252.9
2060 Male, age 76, both hemispheres 6391.9
2372 Male, age 61, both hemispheres 6113.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 6683.2
1986 Male, age 76, both hemispheres 7547.3
2741 Female, age 85, both hemispheres 6599.7
2302 Female, age 91, both hemispheres 6587.7
2180 Male, age 61, both hemispheres 6545.7
2118 Male, age 80, both hemispheres 6135.7

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 7264.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 7264.0
FF:10174-103C3 60 years, female 8093.0
FF:10038-101F2 18-64 years, mixed 7160.5
FF:10155-103A2 76 years, female 6538.6

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2416.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 2416.1
Samples: 4

Max nTPM: 2651.6
Min nTPM: 2073.4
Sample A Female 2073.4
Sample B Female 2378.0
Sample C Male 2651.6
Sample D Male 2561.3

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 13.0
77800883 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 19.4
79490114 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 15.8
276 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 6.7
275 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 3.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.