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SNRPD2
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:305.0 nTPM
HPA:305.0 nTPM
GTEx:233.6 nTPM
FANTOM5:93.4 Scaled Tags Per Million
Pig:84.5 nTPM
Mouse:65.0 nTPM
Allen mouse:4.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 305.0
Sample id Sample description nTPM
Amygdala
nTPM: 305.0
2814 Male, age 76, right hemisphere 310.8
2695 Female, age 67, right hemisphere 307.0
1987 Female, age 91, left hemisphere 304.3
2514 Male, age 75, right hemisphere 302.7
2517 Female, age 94, left hemisphere 300.4
Basal amygdala
nTPM: 301.3
2685 Female, age 94, left hemisphere 303.9
2609 Male, age 75, right hemisphere 303.7
1955 Male, age 76, both hemispheres 301.9
2110 Male, age 80, left hemisphere 301.3
2243 Female, age 91, right hemisphere 300.9
2827 Female, age 67, right hemisphere 295.8
Central amygdala
nTPM: 302.5
2826 Female, age 94, left hemisphere 313.5
1905 Male, age 76, both hemispheres 304.7
2515 Male, age 75, right hemisphere 302.6
2701 Female, age 91, right hemisphere 297.8
2239 Male, age 80, left hemisphere 294.1
Corticomedial amygdala
nTPM: 300.9
2829 Male, age 80, left hemisphere 309.2
2242 Female, age 91, right hemisphere 306.3
2429 Female, age 94, left hemisphere 302.0
2428 Male, age 75, right hemisphere 301.3
2240 Male, age 76, both hemispheres 293.8
2535 Female, age 67, right hemisphere 292.9
Lateral amygdala
nTPM: 299.9
2534 Female, age 94, left hemisphere 308.8
2516 Male, age 75, right hemisphere 306.7
1883 Male, age 76, both hemispheres 304.2
2830 Female, age 67, right hemisphere 293.6
2255 Female, age 91, right hemisphere 293.3
2256 Male, age 80, left hemisphere 292.6
Stria terminalis, bed nucleus
nTPM: 302.4
1974 Female, age 91, both hemispheres 313.8
2201 Male, age 74, unknown 301.1
2486 Female, age 94, both hemispheres 292.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 233.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 233.6
Samples: 152

Max nTPM: 693.3
Min nTPM: 117.6
Std nTPM: 78.8
Median nTPM: 220.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 693.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 550.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 549.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 538.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 453.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 424.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 422.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 386.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 361.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 337.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 327.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 317.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 317.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 306.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 303.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 301.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 301.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 297.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 288.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 280.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 277.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 276.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 274.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 273.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 271.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 267.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 261.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 261.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 261.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 260.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 259.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 256.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 255.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 254.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 254.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 249.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 248.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 248.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 246.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 244.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 243.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 242.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 240.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 240.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 240.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 239.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 238.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 238.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 237.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 235.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 234.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 234.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 232.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 230.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 229.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 229.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 229.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 229.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 229.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 229.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 229.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 228.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 228.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 227.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 227.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 227.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 225.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 225.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 225.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 224.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 224.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 224.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 223.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 222.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 222.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 220.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 219.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 218.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 218.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 217.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 216.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 216.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 216.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 215.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 214.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 214.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 213.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 213.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 211.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 210.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 210.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 208.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 206.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 205.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 205.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 204.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 202.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 201.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 201.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 199.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 199.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 197.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 197.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 196.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 196.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 196.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 193.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 193.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 193.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 192.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 192.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 191.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 190.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 190.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 189.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 187.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 186.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 186.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 186.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 186.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 186.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 185.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 184.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 183.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 179.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 179.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 177.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 177.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 175.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 174.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 172.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 170.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 170.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 169.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 169.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 168.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 167.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 167.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 164.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 164.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 164.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 162.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 161.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 160.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 159.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 157.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 155.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 154.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 148.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 146.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 142.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 117.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 93.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 93.4
FF:10151-102I7 76 years, female 93.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 84.5
Pig sample Sample description nTPM
Amygdala
nTPM: 84.5
Samples: 4

Max nTPM: 126.8
Min nTPM: 52.7
Sample A Female 126.8
Sample B Female 81.1
Sample C Male 77.4
Sample D Male 52.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 65.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 65.0
Samples: 4

Max nTPM: 66.9
Min nTPM: 62.6
Sample A Male 66.9
Sample B Male 65.9
Sample C Female 62.6
Sample D Female 64.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.6
68744002 Antisense, RP_050203_02_A05, Mouse strain C57BL/6J (56 days, male) 4.6

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