MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:308.3 nTPM
HPA:308.3 nTPM
GTEx:211.2 nTPM
FANTOM5:73.2 Scaled Tags Per Million
Pig:146.8 nTPM
Mouse:45.2 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 308.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 302.7
1870 Female, age 42, unknown 308.6
2586 Male, age 75, left hemisphere 308.5
1827 Male, age 72, unknown 307.5
2411 Female, age 72, unknown 303.3
2828 Female, age 72, unknown 302.0
2019 Male, age 18, unknown 301.9
2666 Male, age 74, left hemisphere 301.7
1833 Male, age 53, unknown 299.8
1830 Male, age 51, unknown 297.8
2219 Male, age 76, both hemispheres 295.5
Dorsal raphe nucleus
nTPM: 304.5
2298 Female, age 72, unknown 309.8
2047 Male, age 72, unknown 309.1
1828 Male, age 53, unknown 302.9
2750 Male, age 76, both hemispheres 302.5
2016 Female, age 72, unknown 298.2
Inferior colliculus
nTPM: 304.1
1848 Female, age 42, unknown 306.3
2097 Female, age 72, unknown 303.9
2849 Male, age 72, unknown 303.7
1890 Male, age 53, unknown 302.4
Median raphe nucleus
nTPM: 308.3
2220 Male, age 76, midline 308.3
Pedunculopontine tegmental nucleus
nTPM: 304.0
2334 Male, age 80, both hemispheres 307.2
1921 Female, age 85, both hemispheres 306.4
2338 Male, age 61, both hemispheres 298.3
Periaquaductal grey, anterior
nTPM: 302.2
1795 Male, age 51, unknown 303.3
1947 Male, age 18, unknown 303.2
2502 Female, age 75, unknown 300.1
Periaquaductal grey, dorsal
nTPM: 297.9
2850 Male, age 76, both hemispheres 302.5
1840 Male, age 53, unknown 302.2
1831 Male, age 72, unknown 297.0
2464 Female, age 72, unknown 289.9
Periaquaductal grey, lateral
nTPM: 298.9
2053 Male, age 18, unknown 301.3
2272 Male, age 74, both hemispheres 299.6
2140 Male, age 76, both hemispheres 295.9
Pretectal area
nTPM: 306.0
1817 Female, age 42, unknown 315.1
1944 Female, age 72, unknown 311.9
2007 Male, age 72, unknown 311.8
1816 Male, age 51, unknown 309.1
1815 Male, age 53, unknown 306.9
2667 Female, age 75, unknown 305.9
2224 Female, age 72, unknown 305.6
2825 Male, age 18, unknown 304.2
2407 Male, age 75, both hemispheres 300.5
2273 Male, age 74, both hemispheres 299.7
2316 Male, age 76, right hemisphere 295.7
Red nucleus
nTPM: 302.0
1821 Female, age 72, unknown 312.4
2725 Female, age 75, unknown 306.2
2584 Male, age 75, left hemisphere 305.3
2785 Male, age 18, unknown 303.4
1954 Female, age 42, unknown 303.1
2503 Female, age 72, unknown 302.0
2227 Male, age 72, unknown 300.3
1904 Male, age 53, unknown 299.9
1865 Male, age 51, unknown 299.8
2769 Male, age 72, unknown 299.4
2588 Male, age 74, left hemisphere 296.5
2823 Male, age 76, right hemisphere 295.3
Substantia nigra
nTPM: 307.4
1916 Female, age 42, unknown 313.3
1851 Male, age 51, unknown 312.6
1889 Female, age 72, unknown 312.0
2665 Male, age 74, both hemispheres 311.1
1941 Male, age 53, unknown 309.6
2699 Male, age 18, unknown 309.4
2590 Female, age 75, unknown 303.5
2409 Female, age 72, unknown 301.9
2241 Male, age 72, unknown 301.0
2583 Male, age 75, right hemisphere 299.7
Superior colliculus
nTPM: 303.3
2587 Male, age 74, left hemisphere 310.3
1895 Male, age 76, right hemisphere 308.1
1796 Male, age 53, unknown 308.0
2668 Female, age 75, unknown 304.3
1839 Male, age 51, unknown 303.9
2087 Female, age 72, unknown 302.1
1995 Male, age 72, unknown 299.7
1913 Female, age 42, unknown 299.4
2664 Male, age 75, both hemispheres 298.9
2261 Male, age 18, unknown 298.2
Ventral tegmental area
nTPM: 304.6
1915 Female, age 42, unknown 311.5
2410 Female, age 72, unknown 307.9
2218 Male, age 76, both hemispheres 303.8
2223 Female, age 72, unknown 303.1
1942 Male, age 51, unknown 301.8
2021 Male, age 53, unknown 299.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 211.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 211.2
Samples: 139

Max nTPM: 516.8
Min nTPM: 122.2
Std nTPM: 55.7
Median nTPM: 199.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 516.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 402.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 399.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 322.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 322.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 318.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 312.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 312.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 310.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 304.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 299.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.2
FF:10158-103A5 76 years, female 73.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 146.8
Pig sample Sample description nTPM
Midbrain
nTPM: 141.7
Samples: 4

Max nTPM: 212.5
Min nTPM: 108.3
Sample A Female 212.5
Sample B Female 125.6
Sample C Male 120.2
Sample D Male 108.3
Periaqueductal gray
nTPM: 101.0
Samples: 3

Max nTPM: 120.1
Min nTPM: 86.4
Sample B Female 96.4
Sample C Male 120.1
Sample D Male 86.4
Substantia nigra
nTPM: 137.1
Samples: 4

Max nTPM: 186.4
Min nTPM: 114.6
Sample A Female 186.4
Sample B Female 129.0
Sample C Male 118.4
Sample D Male 114.6
Superior colliculi
nTPM: 146.8
Samples: 4

Max nTPM: 192.9
Min nTPM: 126.2
Sample A Female 192.9
Sample B Female 137.7
Sample C Male 130.4
Sample D Male 126.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.2
Samples: 4

Max nTPM: 49.1
Min nTPM: 41.9
Sample A Male 49.1
Sample B Male 41.9
Sample C Female 43.0
Sample D Female 46.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
68744002 Antisense, RP_050203_02_A05, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.