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SNRPD2
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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:315.5 nTPM
HPA:315.5 nTPM
FANTOM5:75.3 Scaled Tags Per Million
Pig:138.5 nTPM
Mouse:49.3 nTPM
Allen mouse:3.4 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 315.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 305.0
2396 Male, age 61, right hemisphere 317.2
2032 Female, age 42, unknown 302.5
2497 Male, age 66, unknown 295.5
Centromedial thalamic nucleus
nTPM: 294.2
2401 Male, age 76, right hemisphere 301.0
2279 Female, age 85, left hemisphere 287.4
Habenula
nTPM: 305.7
1957 Male, age 80, both hemispheres 314.3
2276 Male, age 66, unknown 305.7
2203 Male, age 61, left hemisphere 304.8
2252 Male, age 62, unknown 298.0
Lateral geniculate body
nTPM: 308.2
2035 Female, age 72, unknown 316.4
1953 Male, age 62, unknown 316.2
2575 Female, age 94, right hemisphere 316.2
2106 Female, age 67, right hemisphere 315.0
2399 Male, age 61, left hemisphere 303.7
2857 Male, age 74, right hemisphere 301.7
2841 Male, age 80, both hemispheres 298.9
2659 Male, age 66, unknown 297.5
Lateral thalamic nuclei
nTPM: 305.2
2573 Female, age 94, left hemisphere 315.5
2765 Female, age 67, both hemispheres 307.7
1903 Male, age 76, left hemisphere 303.8
2577 Male, age 74, both hemispheres 300.4
2661 Female, age 72, unknown 298.4
Medial dorsal thalamic nucleus
nTPM: 308.4
2572 Female, age 94, right hemisphere 349.5
1971 Male, age 61, right hemisphere 314.1
1810 Male, age 48, unknown 310.5
1859 Male, age 76, both hemispheres 310.5
2026 Male, age 62, unknown 310.0
2498 Male, age 66, unknown 309.0
2039 Female, age 72, unknown 305.6
2492 Male, age 75, right hemisphere 304.2
2576 Male, age 74, both hemispheres 303.3
1930 Female, age 42, unknown 301.9
2402 Female, age 67, both hemispheres 299.6
2283 Male, age 80, right hemisphere 297.0
2660 Female, age 72, unknown 293.5
Medial geniculate body
nTPM: 306.3
2650 Female, age 94, left hemisphere 323.9
2571 Male, age 75, right hemisphere 310.9
1811 Female, age 42, unknown 309.7
2657 Male, age 74, right hemisphere 304.6
2049 Male, age 76, both hemispheres 304.4
2207 Male, age 80, right hemisphere 297.7
2217 Female, age 72, unknown 292.7
Nucleus reuniens
nTPM: 299.9
2212 Female, age 67, left hemisphere 310.1
2205 Male, age 80, left hemisphere 302.2
2210 Female, age 85, left hemisphere 287.2
Nucleus rhomboideus
nTPM: 296.9
2206 Male, age 80, both hemispheres 306.1
2213 Female, age 67, left hemisphere 299.5
2280 Female, age 85, left hemisphere 284.9
Posterior thalamic nucleus
nTPM: 315.5
2649 Female, age 94, both hemispheres 365.0
2655 Male, age 74, right hemisphere 301.4
2266 Male, age 76, right hemisphere 300.4
2495 Female, age 67, right hemisphere 295.2
Pulvinar
nTPM: 304.3
1972 Male, age 62, unknown 313.2
1932 Male, age 80, right hemisphere 308.2
2496 Female, age 67, right hemisphere 305.0
2398 Male, age 61, left hemisphere 304.7
2499 Male, age 66, unknown 304.7
1929 Male, age 48, unknown 304.4
2724 Male, age 74, right hemisphere 302.3
2214 Male, age 76, right hemisphere 301.4
2582 Female, age 72, unknown 300.0
1899 Female, age 42, unknown 299.5
Subthalamic nucleus
nTPM: 303.3
2406 Female, age 72, unknown 313.6
2658 Male, age 74, both hemispheres 310.3
2124 Male, age 62, unknown 308.4
2275 Male, age 66, unknown 306.6
2282 Male, age 61, both hemispheres 300.3
2779 Female, age 42, unknown 299.3
2056 Female, age 72, unknown 297.8
2216 Male, age 48, unknown 290.3
Ventral posterolateral thalamic nucleus
nTPM: 300.8
2570 Male, age 75, right hemisphere 307.6
2740 Male, age 76, right hemisphere 305.3
2197 Male, age 80, both hemispheres 304.0
2578 Male, age 74, both hemispheres 301.2
2397 Male, age 61, right hemisphere 300.2
2581 Female, age 72, unknown 286.2
Ventral posteromedial thalamic nucleus
nTPM: 300.7
2202 Male, age 61, left hemisphere 306.0
2281 Male, age 75, right hemisphere 302.2
2758 Male, age 80, both hemispheres 300.6
2653 Male, age 74, both hemispheres 298.9
2127 Male, age 76, right hemisphere 295.8
Ventral thalamic nuclei
nTPM: 302.9
1845 Male, age 48, unknown 315.0
1860 Male, age 76, both hemispheres 310.8
2580 Male, age 66, unknown 307.9
1912 Female, age 42, unknown 304.4
2285 Male, age 62, unknown 300.6
2652 Male, age 74, left hemisphere 299.1
2204 Male, age 80, both hemispheres 298.1
2858 Female, age 72, unknown 295.5
2291 Female, age 72, unknown 295.1
Ventromedial nucleus
nTPM: 313.9
1982 Female, age 72, unknown 320.4
1822 Female, age 42, unknown 307.5
Zona incerta
nTPM: 299.6
2215 Male, age 66, unknown 306.8
2822 Male, age 74, right hemisphere 305.8
2208 Male, age 80, right hemisphere 297.5
2403 Male, age 62, unknown 296.8
2663 Female, age 72, unknown 291.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 75.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 75.3
FF:10154-103A1 76 years, female 75.3

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 138.5
Pig sample Sample description nTPM
Thalamus
nTPM: 138.5
Samples: 4

Max nTPM: 180.3
Min nTPM: 107.3
Sample A Female 180.3
Sample B Female 107.3
Sample C Male 137.0
Sample D Male 129.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 49.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 49.3
Samples: 4

Max nTPM: 57.7
Min nTPM: 42.7
Sample A Male 49.9
Sample B Male 47.0
Sample C Female 57.7
Sample D Female 42.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 3.4
68744002 Antisense, RP_050203_02_A05, Mouse strain C57BL/6J (56 days, male) 3.4

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