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SNRPD2
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:120.8 nTPM
GTEx:120.8 nTPM
FANTOM5:41.8 Scaled Tags Per Million
Pig:38.1 nTPM
Mouse:67.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 120.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 120.8
Samples: 105

Max nTPM: 174.0
Min nTPM: 38.9
Std nTPM: 27.3
Median nTPM:
218_1 71 years, female 174.0
452_1 88 years, female 170.6
319_1 81 years, male 167.2
321_1 62 years, female 166.0
384_1 83 years, male 165.9
177_1 74 years, male 165.2
377_1 82 years, female 160.3
355_1 70 years, female 158.2
163_1 78 years, male 157.3
322_1 76 years, male 154.6
237_1 82 years, male 151.5
243_1 75 years, male 148.3
379_1 60 years, male 147.1
404_1 82 years, female 147.0
173_1 67 years, male 146.5
317_1 60 years, male 146.1
386_1 76 years, male 146.0
320_1 89 years, female 145.8
17_1 71 years, male 145.0
405_1 91 years, male 145.0
394_1 75 years, female 143.7
189_1 76 years, male 142.9
99_1 64 years, male 141.9
356_1 87 years, female 141.4
351_1 91 years, male 141.2
376_1 75 years, female 140.2
246_1 77 years, male 139.2
35_1 74 years, female 138.9
41_1 94 years, female 138.9
447_1 81 years, male 138.0
354_1 81 years, female 136.5
153_1 70 years, female 136.4
506_1 65 years, male 136.0
229_1 69 years, female 135.2
4_1 88 years, female 135.1
251_1 78 years, male 135.1
352_1 62 years, male 135.1
318_1 68 years, male 133.9
349_1 83 years, male 133.9
316_1 62 years, male 131.1
389_1 86 years, female 131.0
295_1 61 years, female 130.9
406_1 79 years, male 130.7
2_1 77 years, female 130.6
425_1 59 years, female 129.5
265_1 87 years, male 128.9
353_1 82 years, female 127.5
120_1 70 years, female 127.3
172_1 72 years, female 126.8
350_1 84 years, female 126.7
396_1 62 years, male 126.6
503_1 68 years, male 125.9
115_1 83 years, male 124.6
347_1 72 years, male 123.2
375_1 74 years, female 123.1
254_1 77 years, female 123.0
264_1 73 years, female 122.9
335_1 73 years, female 121.9
291_1 76 years, male 121.2
315_1 62 years, female 119.5
6_1 73 years, female 119.2
286_1 68 years, female 119.0
480_1 63 years, male 118.9
293_1 68 years, female 117.2
137_1 83 years, male 116.8
145_1 84 years, male 115.9
217_1 76 years, male 114.6
311_1 78 years, male 113.1
348_1 84 years, male 112.9
266_1 85 years, male 112.5
526_1 61 years, male 111.4
308_1 70 years, female 111.0
517_1 88 years, male 109.6
307_1 66 years, female 109.5
292_1 71 years, male 108.4
313_1 79 years, female 107.4
18_1 88 years, male 106.9
9_1 66 years, female 105.0
324_1 76 years, male 103.0
126_1 63 years, male 102.9
42_1 85 years, male 101.6
109_1 81 years, female 101.5
139_1 64 years, female 101.1
119_1 70 years, female 98.6
499_1 55 years, female 98.5
518_1 75 years, female 97.8
468_1 89 years, male 97.3
117_1 61 years, male 96.3
314_1 67 years, male 94.5
81_1 67 years, male 92.4
142_1 61 years, female 92.3
414_1 84 years, female 89.4
288_1 66 years, female 89.2
162_1 79 years, female 83.4
89_1 63 years, male 81.8
495_1 57 years, female 80.1
415_1 77 years, female 79.6
466_1 57 years, female 73.8
32_1 67 years, male 72.6
43_1 64 years, female 69.8
501_1 88 years, male 69.7
149_1 88 years, male 63.3
413_1 59 years, female 62.5
490_1 67 years, female 42.8
491_1 89 years, female 38.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 41.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 41.8
FF:10030-101E3 24-65 years, mixed 41.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.1
Pig sample Sample description nTPM
Retina
nTPM: 38.1
Samples: 4

Max nTPM: 41.2
Min nTPM: 33.5
Sample A Female 36.6
Sample B Female 41.1
Sample C Male 41.2
Sample D Male 33.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.7
Mouse sample Sample description nTPM
Retina
nTPM: 67.7
Samples: 4

Max nTPM: 78.2
Min nTPM: 61.4
Sample A Male 67.7
Sample B Male 63.3
Sample C Female 78.2
Sample D Female 61.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.