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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:3565.1 nTPM
GTEx:2428.5 nTPM
FANTOM5:1489.0 Scaled Tags Per Million
Pig:810.8 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 3565.1
Sample id Sample description nTPM
Putamen
nTPM: 3565.1
2647 Male, age 75, left hemisphere 4371.9
2489 Female, age 72, unknown 4337.3
1829 Male, age 74, unknown 3906.1
2482 Female, age 94, left hemisphere 3868.7
1937 Female, age 91, right hemisphere 2885.4
2466 Female, age 79, unknown 2803.7
1838 Male, age 80, right hemisphere 2782.2

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2428.5
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 2428.5
Samples: 205

Max nTPM: 12551.9
Min nTPM: 78.1
Std nTPM: 1862.9
Median nTPM: 1986.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 12551.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 10183.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 9560.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 7543.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 7185.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 7061.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 6716.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 6671.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 6573.7
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 6378.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 6318.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 5792.4
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 5621.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 5574.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 5520.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 5336.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 5296.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 5054.2
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 4870.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 4834.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 4785.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 4749.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 4691.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 4688.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 4581.7
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 4486.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 4409.7
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 4373.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 4336.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 4291.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 4279.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 4154.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 4028.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 3988.6
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 3950.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 3880.5
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 3877.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 3745.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 3582.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 3536.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 3467.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 3388.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 3334.6
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 3313.4
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 3302.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 3227.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 3197.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 3138.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 3136.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 3089.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 3039.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 2984.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 2974.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 2902.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 2848.6
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 2835.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 2819.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 2804.3
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 2779.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 2756.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 2734.7
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 2732.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 2728.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 2717.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 2710.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 2626.1
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 2618.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 2584.6
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 2576.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 2503.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 2482.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 2472.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 2436.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 2430.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 2430.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 2409.7
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 2391.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 2389.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 2387.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 2327.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 2319.3
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 2312.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 2296.8
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 2244.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 2238.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 2172.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 2164.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 2148.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 2141.2
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 2137.6
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 2130.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 2128.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 2122.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 2114.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 2098.4
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 2084.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 2069.9
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 2054.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 2053.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 2039.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 2014.0
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 2005.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 1986.8
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 1902.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 1883.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 1867.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 1859.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 1853.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 1849.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 1839.8
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 1812.1
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 1810.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 1805.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 1800.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 1790.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 1781.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 1744.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 1719.4
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 1699.6
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 1694.7
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 1672.7
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 1639.6
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1637.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 1626.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1624.8
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 1618.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1546.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 1510.1
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 1507.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1502.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 1479.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 1466.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1452.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 1442.7
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 1442.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 1422.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1420.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 1384.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 1375.2
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 1367.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 1366.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 1365.8
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 1345.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 1339.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 1319.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 1317.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 1313.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1293.8
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 1293.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 1282.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 1269.2
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 1260.3
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 1258.6
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 1244.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 1197.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 1196.8
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1187.6
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 1177.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 1129.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 1091.3
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 1083.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 1061.9
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 1025.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1006.0
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 994.3
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 989.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 973.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 965.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 961.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 942.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 931.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 904.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 900.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 864.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 864.6
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 862.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 855.4
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 795.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 771.0
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 755.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 728.0
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 714.5
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 710.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 707.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 706.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 705.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 700.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 690.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 657.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 641.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 608.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 567.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 564.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 548.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 531.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 509.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 500.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 462.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 422.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 361.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 286.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 280.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 218.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 165.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 78.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1489.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 1489.0
FF:10176-103C5 60 years, female 1489.0

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 810.8
Pig sample Sample description nTPM
Putamen
nTPM: 810.8
Samples: 4

Max nTPM: 1370.8
Min nTPM: 593.6
Sample A Female 1370.8
Sample B Female 593.6
Sample C Male 602.0
Sample D Male 676.9

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