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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:275.4 nTPM
FANTOM5:804.6 Scaled Tags Per Million
Pig:288.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA029292Antibody HPA071992
Glial cells LowMedium
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 275.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 275.4
Samples: 246

Max nTPM: 607.1
Min nTPM: 187.7
Std nTPM: 48.5
Median nTPM: 267.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 607.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 431.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 410.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 406.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 397.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 383.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 381.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 378.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 377.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 375.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 374.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 374.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 363.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 357.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 351.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 349.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 347.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 343.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 343.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 342.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 341.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 339.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 338.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 337.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 336.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 335.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 332.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 332.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 331.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 331.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 330.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 330.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 330.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 325.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 325.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 324.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 322.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 322.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 319.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 317.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 316.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 314.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 311.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 310.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 309.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 306.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 306.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 304.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 304.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 304.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 303.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 301.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 301.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 301.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 300.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 300.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 300.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 299.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 298.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 298.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 297.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 297.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 297.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 295.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 294.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 294.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 293.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 292.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 292.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 292.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 291.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 290.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 290.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 290.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 290.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 290.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 289.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 288.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 288.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 287.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 287.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 287.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 285.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 285.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 284.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 283.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 283.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 282.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 282.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 281.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 280.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 280.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 279.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 278.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 278.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 278.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 278.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 277.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 276.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 276.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 275.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 275.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 275.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 275.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 274.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 274.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 274.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 274.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 273.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 272.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 272.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 272.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 272.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 271.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 271.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 270.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 270.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 270.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 269.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 268.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 268.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 267.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 267.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 266.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 266.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 265.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 265.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 265.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 264.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 264.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 264.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 264.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 263.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 262.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 262.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 261.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 261.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 261.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 260.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 260.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 260.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 259.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 259.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 258.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 258.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 258.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 257.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 257.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 257.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 257.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 256.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 256.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 255.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 255.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 255.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 255.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 254.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 254.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 254.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 254.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 254.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 253.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 253.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 253.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 252.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 252.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 251.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 251.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 250.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 250.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 250.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 250.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 250.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 249.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 249.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 248.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 248.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 248.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 247.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 247.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 247.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 247.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 247.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 246.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 246.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 245.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 245.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 245.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 245.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 244.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 243.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 243.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 242.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 242.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 242.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 241.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 241.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 239.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 239.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 237.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 237.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 236.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 235.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 235.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 233.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 232.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 231.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 231.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 230.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 230.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 230.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 229.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 228.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 228.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 228.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 227.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 227.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 226.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 226.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 225.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 224.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 223.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 221.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 219.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 219.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 219.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 218.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 215.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 215.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 215.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 215.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 212.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 211.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 211.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 210.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 210.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 209.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 209.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 206.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 206.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 204.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 203.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 201.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 200.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 195.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 187.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 804.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 804.6
FF:10164-103B2 76 years, female 804.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 288.9
Pig sample Sample description nTPM
Caudate
nTPM: 288.9
Samples: 4

Max nTPM: 331.2
Min nTPM: 249.4
Sample A Female 302.2
Sample B Female 272.8
Sample C Male 331.2
Sample D Male 249.4

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