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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1032.4 nTPM
HPA:1032.4 nTPM
GTEx:1372.6 nTPM
FANTOM5:24.2 Scaled Tags Per Million
Pig:58.7 nTPM
Mouse:717.1 nTPM
Allen mouse:19.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1032.4
Sample id Sample description nTPM
Amygdala
nTPM: 1032.4
2695 Female, age 67, right hemisphere 1070.3
2514 Male, age 75, right hemisphere 1053.5
1987 Female, age 91, left hemisphere 1023.0
2517 Female, age 94, left hemisphere 1019.6
2814 Male, age 76, right hemisphere 995.4
Basal amygdala
nTPM: 997.5
2827 Female, age 67, right hemisphere 1042.3
2609 Male, age 75, right hemisphere 1013.8
2110 Male, age 80, left hemisphere 1002.9
2685 Female, age 94, left hemisphere 989.0
2243 Female, age 91, right hemisphere 969.7
1955 Male, age 76, both hemispheres 967.3
Central amygdala
nTPM: 1020.7
2826 Female, age 94, left hemisphere 1111.4
2515 Male, age 75, right hemisphere 1052.4
2239 Male, age 80, left hemisphere 988.2
1905 Male, age 76, both hemispheres 981.5
2701 Female, age 91, right hemisphere 969.9
Corticomedial amygdala
nTPM: 996.5
2428 Male, age 75, right hemisphere 1032.4
2535 Female, age 67, right hemisphere 998.8
2829 Male, age 80, left hemisphere 997.8
2240 Male, age 76, both hemispheres 983.5
2242 Female, age 91, right hemisphere 983.3
2429 Female, age 94, left hemisphere 983.1
Lateral amygdala
nTPM: 1021.7
2516 Male, age 75, right hemisphere 1077.9
2830 Female, age 67, right hemisphere 1074.9
2534 Female, age 94, left hemisphere 1042.5
2256 Male, age 80, left hemisphere 996.5
1883 Male, age 76, both hemispheres 973.8
2255 Female, age 91, right hemisphere 964.7
Stria terminalis, bed nucleus
nTPM: 980.1
1974 Female, age 91, both hemispheres 1009.1
2201 Male, age 74, unknown 969.5
2486 Female, age 94, both hemispheres 961.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1372.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1372.6
Samples: 152

Max nTPM: 5999.8
Min nTPM: 657.3
Std nTPM: 672.0
Median nTPM: 1223.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5999.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4040.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3997.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3118.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2910.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2840.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2755.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2739.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2613.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2439.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2349.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2331.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2050.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2031.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2012.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1944.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1880.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1858.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1843.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1839.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1829.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1818.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1798.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1716.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1709.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1667.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1667.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1619.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1607.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1600.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1578.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1553.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1549.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1541.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1534.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1526.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1524.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1495.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1482.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1453.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1441.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1440.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1427.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1424.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1413.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1409.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1397.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1389.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1388.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1377.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1361.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1354.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1351.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1348.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1329.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1324.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1317.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1314.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1314.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1310.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1307.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1302.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1299.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1298.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1295.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1292.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1290.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1282.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1266.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1256.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1244.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1241.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1236.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1231.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1229.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1225.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1221.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1221.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1221.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1217.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1214.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1211.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1205.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1197.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1195.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1193.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1189.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1178.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1169.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1157.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1157.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1156.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1137.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1130.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1118.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1108.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1104.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1093.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1081.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1078.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1076.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1061.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1060.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1045.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1044.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1038.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1029.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1029.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1023.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1020.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1012.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1010.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1009.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1000.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 992.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 991.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 990.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 971.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 970.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 970.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 962.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 961.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 952.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 948.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 939.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 922.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 919.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 914.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 904.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 903.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 894.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 894.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 885.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 879.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 869.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 863.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 858.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 857.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 812.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 783.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 782.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 781.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 776.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 756.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 755.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 739.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 737.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 712.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 702.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 698.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 690.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 657.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 24.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 24.2
FF:10151-102I7 76 years, female 24.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.7
Pig sample Sample description nTPM
Amygdala
nTPM: 58.7
Samples: 4

Max nTPM: 77.7
Min nTPM: 36.9
Sample A Female 65.2
Sample B Female 77.7
Sample C Male 54.9
Sample D Male 36.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 717.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 717.1
Samples: 4

Max nTPM: 742.1
Min nTPM: 691.4
Sample A Male 691.4
Sample B Male 729.7
Sample C Female 742.1
Sample D Female 705.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 19.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.8
68191186 Antisense, RP_041122_02_H09, Mouse strain C57BL/6J (56 days, male) 19.8

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