MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1025.1 nTPM
HPA:1025.1 nTPM
GTEx:1352.7 nTPM
FANTOM5:22.7 Scaled Tags Per Million
Pig:84.0 nTPM
Mouse:785.1 nTPM
Allen mouse:15.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1025.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1002.5
2666 Male, age 74, left hemisphere 1020.3
2411 Female, age 72, unknown 1018.9
1870 Female, age 42, unknown 1017.0
1827 Male, age 72, unknown 1003.3
2828 Female, age 72, unknown 1001.6
1830 Male, age 51, unknown 1000.2
2219 Male, age 76, both hemispheres 994.5
1833 Male, age 53, unknown 991.3
2586 Male, age 75, left hemisphere 989.8
2019 Male, age 18, unknown 987.9
Dorsal raphe nucleus
nTPM: 1009.8
2298 Female, age 72, unknown 1046.7
2016 Female, age 72, unknown 1025.2
2750 Male, age 76, both hemispheres 1002.8
1828 Male, age 53, unknown 996.1
2047 Male, age 72, unknown 978.1
Inferior colliculus
nTPM: 1012.0
1890 Male, age 53, unknown 1024.2
2097 Female, age 72, unknown 1021.2
2849 Male, age 72, unknown 1001.9
1848 Female, age 42, unknown 1000.7
Median raphe nucleus
nTPM: 995.2
2220 Male, age 76, midline 995.2
Pedunculopontine tegmental nucleus
nTPM: 1014.4
2338 Male, age 61, both hemispheres 1030.9
2334 Male, age 80, both hemispheres 1026.5
1921 Female, age 85, both hemispheres 986.0
Periaquaductal grey, anterior
nTPM: 1014.6
2502 Female, age 75, unknown 1043.2
1947 Male, age 18, unknown 1005.6
1795 Male, age 51, unknown 994.9
Periaquaductal grey, dorsal
nTPM: 1011.2
1840 Male, age 53, unknown 1040.7
2464 Female, age 72, unknown 1009.2
1831 Male, age 72, unknown 1002.9
2850 Male, age 76, both hemispheres 992.1
Periaquaductal grey, lateral
nTPM: 997.4
2053 Male, age 18, unknown 1003.3
2140 Male, age 76, both hemispheres 1001.1
2272 Male, age 74, both hemispheres 987.6
Pretectal area
nTPM: 997.6
2224 Female, age 72, unknown 1018.9
2316 Male, age 76, right hemisphere 1017.5
2825 Male, age 18, unknown 1015.1
2273 Male, age 74, both hemispheres 1003.7
1815 Male, age 53, unknown 1001.3
1816 Male, age 51, unknown 991.3
2007 Male, age 72, unknown 991.2
1817 Female, age 42, unknown 988.7
1944 Female, age 72, unknown 984.1
2667 Female, age 75, unknown 982.1
2407 Male, age 75, both hemispheres 979.7
Red nucleus
nTPM: 1016.6
2503 Female, age 72, unknown 1065.3
1865 Male, age 51, unknown 1031.5
1821 Female, age 72, unknown 1026.8
2725 Female, age 75, unknown 1023.3
1904 Male, age 53, unknown 1019.5
2227 Male, age 72, unknown 1018.8
2769 Male, age 72, unknown 1012.1
2588 Male, age 74, left hemisphere 1010.1
1954 Female, age 42, unknown 1008.6
2584 Male, age 75, left hemisphere 1001.8
2785 Male, age 18, unknown 997.9
2823 Male, age 76, right hemisphere 983.5
Substantia nigra
nTPM: 1025.1
2241 Male, age 72, unknown 1077.1
1851 Male, age 51, unknown 1053.1
2665 Male, age 74, both hemispheres 1044.4
2699 Male, age 18, unknown 1043.5
2409 Female, age 72, unknown 1029.3
1916 Female, age 42, unknown 1018.4
2590 Female, age 75, unknown 1015.2
1889 Female, age 72, unknown 996.6
1941 Male, age 53, unknown 991.5
2583 Male, age 75, right hemisphere 982.1
Superior colliculus
nTPM: 1008.1
2587 Male, age 74, left hemisphere 1035.0
1913 Female, age 42, unknown 1025.5
1995 Male, age 72, unknown 1020.8
1796 Male, age 53, unknown 1012.1
2261 Male, age 18, unknown 1005.5
1839 Male, age 51, unknown 1001.8
2668 Female, age 75, unknown 998.0
1895 Male, age 76, right hemisphere 997.9
2087 Female, age 72, unknown 992.6
2664 Male, age 75, both hemispheres 991.6
Ventral tegmental area
nTPM: 1021.0
1915 Female, age 42, unknown 1042.6
2223 Female, age 72, unknown 1032.0
2021 Male, age 53, unknown 1023.6
2410 Female, age 72, unknown 1020.8
1942 Male, age 51, unknown 1012.6
2218 Male, age 76, both hemispheres 994.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1352.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1352.7
Samples: 139

Max nTPM: 4076.3
Min nTPM: 526.0
Std nTPM: 556.7
Median nTPM: 1233.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4076.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3588.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3339.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2869.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2775.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2463.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2423.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2344.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2216.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2172.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2165.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.7
FF:10158-103A5 76 years, female 22.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.0
Pig sample Sample description nTPM
Midbrain
nTPM: 75.1
Samples: 4

Max nTPM: 96.2
Min nTPM: 59.5
Sample A Female 96.2
Sample B Female 83.6
Sample C Male 61.2
Sample D Male 59.5
Periaqueductal gray
nTPM: 65.9
Samples: 3

Max nTPM: 68.9
Min nTPM: 61.2
Sample B Female 67.5
Sample C Male 68.9
Sample D Male 61.2
Substantia nigra
nTPM: 78.4
Samples: 4

Max nTPM: 104.9
Min nTPM: 58.7
Sample A Female 104.9
Sample B Female 87.9
Sample C Male 62.1
Sample D Male 58.7
Superior colliculi
nTPM: 84.0
Samples: 4

Max nTPM: 97.8
Min nTPM: 67.9
Sample A Female 96.1
Sample B Female 97.8
Sample C Male 74.3
Sample D Male 67.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 785.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 785.1
Samples: 4

Max nTPM: 839.7
Min nTPM: 736.1
Sample A Male 839.7
Sample B Male 792.3
Sample C Female 736.1
Sample D Female 772.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.2
68191186 Antisense, RP_041122_02_H09, Mouse strain C57BL/6J (56 days, male) 15.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.