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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1102.5 nTPM
HPA:1102.5 nTPM
GTEx:1315.0 nTPM
FANTOM5:26.6 Scaled Tags Per Million
Pig:100.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 1102.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1035.5
1981 Female, age 72, midline 1088.8
2048 Male, age 55, midline 1040.5
2565 Male, age 75, midline 1034.3
2194 Female, age 79, both hemispheres 1013.0
2816 Male, age 47, midline 1000.9
Cervical spinal cord, dorsal horn
nTPM: 1054.2
2173 Female, age 72, unknown 1122.1
2069 Male, age 47, both hemispheres 1114.0
2296 Male, age 66, both hemispheres 1077.2
1877 Male, age 55, unknown 1053.5
2721 Male, age 90, both hemispheres 986.1
2297 Male, age 75, both hemispheres 972.1
Cervical spinal cord, ventral horn
nTPM: 1102.5
2480 Male, age 75, both hemispheres 1184.2
2098 Female, age 72, unknown 1169.1
2809 Male, age 90, both hemispheres 1137.6
2295 Male, age 66, both hemispheres 1097.8
2068 Male, age 55, unknown 1060.5
2820 Female, age 79, both hemispheres 965.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1315.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1315.0
Samples: 159

Max nTPM: 2649.7
Min nTPM: 599.5
Std nTPM: 435.8
Median nTPM: 1223.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2649.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2621.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2404.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2372.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2341.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2330.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2266.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2235.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2199.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2166.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2159.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2127.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1981.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1981.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1976.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1971.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1937.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1891.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1891.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1881.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1875.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1851.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1802.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1773.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1772.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1760.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1752.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1741.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1701.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1692.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1688.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1675.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1640.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1624.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1623.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1608.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1591.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1573.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1572.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1567.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1566.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1562.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1556.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1553.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1524.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1481.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1467.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1455.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1443.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1433.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1423.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1413.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1412.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1410.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1384.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1383.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1382.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1370.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1370.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1361.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1354.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1344.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1334.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1333.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1326.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1319.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1310.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1306.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1292.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1290.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1289.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1265.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1260.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1257.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1253.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1252.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1247.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1245.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1228.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1223.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1211.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1210.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1205.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1202.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1200.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1194.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1178.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1158.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1157.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1155.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1153.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1153.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1144.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1137.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1130.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1128.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1116.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1112.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1107.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1101.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1094.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1093.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1091.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1086.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1084.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1083.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1078.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1062.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1056.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1051.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1048.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1032.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1020.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1013.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1012.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1010.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1006.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1006.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1005.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 995.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 995.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 991.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 988.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 976.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 954.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 951.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 950.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 949.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 949.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 938.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 928.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 924.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 918.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 901.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 901.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 890.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 888.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 884.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 883.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 882.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 870.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 870.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 834.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 834.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 823.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 818.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 810.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 805.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 803.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 795.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 756.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 755.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 722.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 706.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 670.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 661.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 618.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 608.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 599.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 26.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 26.6
FF:10181-103D1 60 years, female 34.2
FF:10159-103A6 76 years, female 19.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 100.1
Samples: 4

Max nTPM: 147.5
Min nTPM: 68.7
Sample A Female 70.4
Sample B Female 113.8
Sample C Male 147.5
Sample D Male 68.7
Ventral spinal cord
nTPM: 83.7
Samples: 4

Max nTPM: 95.6
Min nTPM: 66.4
Sample A Female 66.4
Sample B Female 91.8
Sample C Male 95.6
Sample D Male 80.9

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