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RPS3A
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:861.8 nTPM
GTEx:861.8 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:26.8 nTPM
Mouse:1123.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 861.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 861.8
Samples: 105

Max nTPM: 1491.7
Min nTPM: 522.7
Std nTPM: 161.3
Median nTPM:
491_1 89 years, female 1491.7
495_1 57 years, female 1248.2
35_1 74 years, female 1190.1
490_1 67 years, female 1165.9
415_1 77 years, female 1105.0
389_1 86 years, female 1101.1
466_1 57 years, female 1093.0
315_1 62 years, female 1076.1
307_1 66 years, female 1071.7
162_1 79 years, female 1065.2
413_1 59 years, female 1053.1
321_1 62 years, female 1048.8
379_1 60 years, male 1048.0
153_1 70 years, female 1039.6
414_1 84 years, female 1032.7
396_1 62 years, male 1029.5
246_1 77 years, male 1028.7
119_1 70 years, female 1023.8
120_1 70 years, female 1018.7
139_1 64 years, female 1016.3
126_1 63 years, male 1013.9
145_1 84 years, male 1007.9
308_1 70 years, female 1003.1
17_1 71 years, male 1000.7
526_1 61 years, male 995.0
384_1 83 years, male 992.4
217_1 76 years, male 990.8
89_1 63 years, male 989.4
375_1 74 years, female 980.4
501_1 88 years, male 951.1
237_1 82 years, male 947.2
311_1 78 years, male 945.6
42_1 85 years, male 945.2
137_1 83 years, male 937.9
142_1 61 years, female 932.2
386_1 76 years, male 915.8
347_1 72 years, male 912.6
117_1 61 years, male 907.8
4_1 88 years, female 907.3
32_1 67 years, male 904.2
447_1 81 years, male 895.1
499_1 55 years, female 882.7
189_1 76 years, male 882.4
265_1 87 years, male 879.7
322_1 76 years, male 878.8
6_1 73 years, female 865.4
324_1 76 years, male 863.3
518_1 75 years, female 861.9
173_1 67 years, male 859.5
452_1 88 years, female 857.8
313_1 79 years, female 857.7
149_1 88 years, male 855.8
377_1 82 years, female 855.3
218_1 71 years, female 849.2
229_1 69 years, female 839.9
2_1 77 years, female 839.3
18_1 88 years, male 835.7
468_1 89 years, male 834.3
314_1 67 years, male 833.9
109_1 81 years, female 833.4
266_1 85 years, male 827.8
376_1 75 years, female 819.3
81_1 67 years, male 811.7
43_1 64 years, female 807.2
320_1 89 years, female 805.0
288_1 66 years, female 798.4
355_1 70 years, female 797.9
394_1 75 years, female 781.1
115_1 83 years, male 780.3
254_1 77 years, female 776.6
41_1 94 years, female 772.3
348_1 84 years, male 770.6
243_1 75 years, male 746.5
317_1 60 years, male 745.8
405_1 91 years, male 745.6
99_1 64 years, male 744.1
349_1 83 years, male 743.5
480_1 63 years, male 741.7
291_1 76 years, male 727.8
9_1 66 years, female 726.1
335_1 73 years, female 724.3
351_1 91 years, male 722.8
251_1 78 years, male 721.7
295_1 61 years, female 721.5
503_1 68 years, male 717.3
404_1 82 years, female 715.5
316_1 62 years, male 711.2
353_1 82 years, female 704.9
177_1 74 years, male 699.2
352_1 62 years, male 691.7
517_1 88 years, male 691.0
286_1 68 years, female 688.3
354_1 81 years, female 684.7
319_1 81 years, male 681.0
264_1 73 years, female 676.9
172_1 72 years, female 674.7
506_1 65 years, male 654.8
292_1 71 years, male 640.6
350_1 84 years, female 639.4
425_1 59 years, female 622.5
406_1 79 years, male 618.8
318_1 68 years, male 614.4
293_1 68 years, female 600.7
356_1 87 years, female 594.7
163_1 78 years, male 522.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 29.2
FF:10030-101E3 24-65 years, mixed 29.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.8
Pig sample Sample description nTPM
Retina
nTPM: 26.9
Samples: 4

Max nTPM: 28.7
Min nTPM: 25.3
Sample A Female 25.7
Sample B Female 27.7
Sample C Male 28.7
Sample D Male 25.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1123.7
Mouse sample Sample description nTPM
Retina
nTPM: 1123.7
Samples: 4

Max nTPM: 1205.7
Min nTPM: 963.3
Sample A Male 1204.5
Sample B Male 963.3
Sample C Female 1205.7
Sample D Female 1121.1

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.