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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:774.7 nTPM
HPA:774.7 nTPM
GTEx:285.7 nTPM
FANTOM5:1995.0 Scaled Tags Per Million
Pig:1153.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 774.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 702.2
1981 Female, age 72, midline 809.6
2048 Male, age 55, midline 806.9
2816 Male, age 47, midline 644.6
2194 Female, age 79, both hemispheres 642.9
2565 Male, age 75, midline 606.9
Cervical spinal cord, dorsal horn
nTPM: 774.7
2721 Male, age 90, both hemispheres 1059.5
2173 Female, age 72, unknown 757.9
2297 Male, age 75, both hemispheres 737.0
2069 Male, age 47, both hemispheres 724.2
1877 Male, age 55, unknown 705.0
2296 Male, age 66, both hemispheres 664.8
Cervical spinal cord, ventral horn
nTPM: 654.2
2098 Female, age 72, unknown 837.2
2295 Male, age 66, both hemispheres 679.3
2809 Male, age 90, both hemispheres 670.4
2068 Male, age 55, unknown 602.4
2480 Male, age 75, both hemispheres 572.0
2820 Female, age 79, both hemispheres 563.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 285.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 285.7
Samples: 159

Max nTPM: 1054.6
Min nTPM: 78.5
Std nTPM: 159.8
Median nTPM: 250.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1054.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 764.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 763.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 751.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 732.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 720.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 681.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 647.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 632.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 585.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 582.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 569.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 561.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 503.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 470.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 462.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 462.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 459.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 456.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 449.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 446.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 445.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 427.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 426.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 410.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 405.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 404.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 392.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 386.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 383.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 379.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 377.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 376.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 373.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 371.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 370.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 368.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 366.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 365.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 353.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 346.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 345.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 345.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 344.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 340.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 333.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 330.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 329.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 326.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 325.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 321.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 317.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 313.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 311.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 310.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 304.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 299.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 299.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 297.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 291.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 289.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 282.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 280.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 276.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 275.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 274.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 271.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 269.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 268.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 264.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 262.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 260.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 260.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 258.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 256.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 254.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 254.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 254.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 254.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 250.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 247.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 244.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 236.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 234.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 232.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 231.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 230.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 221.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 221.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 219.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 216.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 216.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 214.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 208.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 206.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 202.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 202.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 198.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 198.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 197.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 197.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 196.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 196.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 195.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 192.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 192.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 191.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 190.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 190.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 187.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 186.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 184.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 183.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 181.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 178.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 178.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 177.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 177.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 177.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 173.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 172.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 172.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 171.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 169.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 166.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 166.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 164.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 163.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 157.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 156.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 155.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 154.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 153.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 152.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 152.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 151.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 146.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 145.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 144.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 143.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 143.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 143.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 142.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 135.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 131.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 129.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 129.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 128.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 127.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 125.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 124.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 120.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 112.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 104.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 101.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 95.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 93.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 84.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 78.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1995.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1995.0
FF:10159-103A6 76 years, female 2016.8
FF:10181-103D1 60 years, female 1973.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1153.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 849.0
Samples: 4

Max nTPM: 1059.2
Min nTPM: 583.4
Sample A Female 928.5
Sample B Female 1059.2
Sample C Male 583.4
Sample D Male 824.7
Ventral spinal cord
nTPM: 1153.3
Samples: 4

Max nTPM: 1271.2
Min nTPM: 912.9
Sample A Female 1271.2
Sample B Female 1256.4
Sample C Male 912.9
Sample D Male 1172.8

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