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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:694.8 nTPM
HPA:694.8 nTPM
FANTOM5:1157.4 Scaled Tags Per Million
Pig:944.4 nTPM
Mouse:2235.8 nTPM
Allen mouse:20.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 694.8
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 448.7
2396 Male, age 61, right hemisphere 465.9
2032 Female, age 42, unknown 441.8
2497 Male, age 66, unknown 438.4
Centromedial thalamic nucleus
nTPM: 524.8
2279 Female, age 85, left hemisphere 588.6
2401 Male, age 76, right hemisphere 461.0
Habenula
nTPM: 442.9
2252 Male, age 62, unknown 460.6
2276 Male, age 66, unknown 443.8
1957 Male, age 80, both hemispheres 441.4
2203 Male, age 61, left hemisphere 425.9
Lateral geniculate body
nTPM: 474.2
2857 Male, age 74, right hemisphere 510.7
2841 Male, age 80, both hemispheres 503.6
2575 Female, age 94, right hemisphere 482.0
2035 Female, age 72, unknown 476.5
2106 Female, age 67, right hemisphere 466.1
1953 Male, age 62, unknown 462.7
2659 Male, age 66, unknown 454.8
2399 Male, age 61, left hemisphere 437.0
Lateral thalamic nuclei
nTPM: 447.1
2577 Male, age 74, both hemispheres 470.8
2765 Female, age 67, both hemispheres 463.7
2573 Female, age 94, left hemisphere 439.5
1903 Male, age 76, left hemisphere 430.9
2661 Female, age 72, unknown 430.5
Medial dorsal thalamic nucleus
nTPM: 458.4
1810 Male, age 48, unknown 542.0
2492 Male, age 75, right hemisphere 480.4
2572 Female, age 94, right hemisphere 479.5
1859 Male, age 76, both hemispheres 461.1
2576 Male, age 74, both hemispheres 459.1
1930 Female, age 42, unknown 458.7
2026 Male, age 62, unknown 455.7
2039 Female, age 72, unknown 452.4
2402 Female, age 67, both hemispheres 451.0
2498 Male, age 66, unknown 440.2
2660 Female, age 72, unknown 427.9
2283 Male, age 80, right hemisphere 426.5
1971 Male, age 61, right hemisphere 424.1
Medial geniculate body
nTPM: 528.3
2049 Male, age 76, both hemispheres 637.4
2650 Female, age 94, left hemisphere 561.5
2657 Male, age 74, right hemisphere 553.8
2571 Male, age 75, right hemisphere 541.1
2217 Female, age 72, unknown 499.6
1811 Female, age 42, unknown 453.8
2207 Male, age 80, right hemisphere 451.1
Nucleus reuniens
nTPM: 481.4
2205 Male, age 80, left hemisphere 508.6
2210 Female, age 85, left hemisphere 482.4
2212 Female, age 67, left hemisphere 453.3
Nucleus rhomboideus
nTPM: 451.2
2280 Female, age 85, left hemisphere 477.3
2213 Female, age 67, left hemisphere 442.8
2206 Male, age 80, both hemispheres 433.5
Posterior thalamic nucleus
nTPM: 505.4
2649 Female, age 94, both hemispheres 610.9
2655 Male, age 74, right hemisphere 484.7
2266 Male, age 76, right hemisphere 464.1
2495 Female, age 67, right hemisphere 461.9
Pulvinar
nTPM: 453.5
2499 Male, age 66, unknown 483.0
2724 Male, age 74, right hemisphere 479.9
2214 Male, age 76, right hemisphere 465.5
1932 Male, age 80, right hemisphere 461.3
1972 Male, age 62, unknown 451.1
2496 Female, age 67, right hemisphere 446.5
1929 Male, age 48, unknown 442.9
2582 Female, age 72, unknown 437.0
2398 Male, age 61, left hemisphere 436.0
1899 Female, age 42, unknown 431.4
Subthalamic nucleus
nTPM: 551.8
2282 Male, age 61, both hemispheres 616.5
2124 Male, age 62, unknown 596.6
2275 Male, age 66, unknown 566.8
2658 Male, age 74, both hemispheres 541.7
2779 Female, age 42, unknown 539.5
2056 Female, age 72, unknown 539.0
2406 Female, age 72, unknown 515.0
2216 Male, age 48, unknown 499.6
Ventral posterolateral thalamic nucleus
nTPM: 463.4
2570 Male, age 75, right hemisphere 491.0
2578 Male, age 74, both hemispheres 483.2
2740 Male, age 76, right hemisphere 474.1
2197 Male, age 80, both hemispheres 462.7
2397 Male, age 61, right hemisphere 450.0
2581 Female, age 72, unknown 419.4
Ventral posteromedial thalamic nucleus
nTPM: 473.5
2127 Male, age 76, right hemisphere 509.3
2281 Male, age 75, right hemisphere 497.0
2653 Male, age 74, both hemispheres 472.9
2758 Male, age 80, both hemispheres 450.1
2202 Male, age 61, left hemisphere 438.1
Ventral thalamic nuclei
nTPM: 473.9
2291 Female, age 72, unknown 560.4
2285 Male, age 62, unknown 514.4
1860 Male, age 76, both hemispheres 506.6
2580 Male, age 66, unknown 458.0
2204 Male, age 80, both hemispheres 452.2
2652 Male, age 74, left hemisphere 451.4
1845 Male, age 48, unknown 443.0
1912 Female, age 42, unknown 441.9
2858 Female, age 72, unknown 437.4
Ventromedial nucleus
nTPM: 694.8
1822 Female, age 42, unknown 732.0
1982 Female, age 72, unknown 657.6
Zona incerta
nTPM: 476.2
2822 Male, age 74, right hemisphere 503.6
2403 Male, age 62, unknown 502.0
2215 Male, age 66, unknown 489.7
2208 Male, age 80, right hemisphere 471.2
2663 Female, age 72, unknown 414.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1157.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 1157.4
FF:10154-103A1 76 years, female 1157.4

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 944.4
Pig sample Sample description nTPM
Thalamus
nTPM: 944.4
Samples: 4

Max nTPM: 1143.3
Min nTPM: 749.6
Sample A Female 1143.3
Sample B Female 843.6
Sample C Male 1041.2
Sample D Male 749.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2235.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 2235.8
Samples: 4

Max nTPM: 2515.1
Min nTPM: 1903.5
Sample A Male 1903.5
Sample B Male 2515.1
Sample C Female 2153.7
Sample D Female 2370.8

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 20.7
70429447 Antisense, RP_050614_01_F10, Mouse strain C57BL/6J (56 days, male) 21.6
74750016 Antisense, RP_060220_05_E06, Mouse strain C57BL/6J (56 days, male) 19.8

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