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S100A1
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:811.3 nTPM
HPA:811.3 nTPM
GTEx:895.6 nTPM
FANTOM5:495.2 Scaled Tags Per Million
Pig:1748.8 nTPM
Mouse:220.0 nTPM
Allen mouse:0.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 811.3
Sample id Sample description nTPM
Amygdala
nTPM: 811.3
2695 Female, age 67, right hemisphere 887.3
2814 Male, age 76, right hemisphere 845.2
2514 Male, age 75, right hemisphere 788.4
2517 Female, age 94, left hemisphere 773.1
1987 Female, age 91, left hemisphere 762.5
Basal amygdala
nTPM: 803.1
2609 Male, age 75, right hemisphere 940.4
2243 Female, age 91, right hemisphere 827.0
1955 Male, age 76, both hemispheres 797.8
2110 Male, age 80, left hemisphere 795.3
2685 Female, age 94, left hemisphere 758.2
2827 Female, age 67, right hemisphere 699.7
Central amygdala
nTPM: 796.5
1905 Male, age 76, both hemispheres 834.0
2239 Male, age 80, left hemisphere 820.7
2515 Male, age 75, right hemisphere 792.7
2826 Female, age 94, left hemisphere 773.0
2701 Female, age 91, right hemisphere 762.4
Corticomedial amygdala
nTPM: 790.4
2829 Male, age 80, left hemisphere 837.7
2428 Male, age 75, right hemisphere 822.6
2240 Male, age 76, both hemispheres 791.1
2242 Female, age 91, right hemisphere 790.2
2429 Female, age 94, left hemisphere 786.1
2535 Female, age 67, right hemisphere 714.9
Lateral amygdala
nTPM: 789.7
2516 Male, age 75, right hemisphere 889.6
2256 Male, age 80, left hemisphere 805.5
1883 Male, age 76, both hemispheres 799.6
2255 Female, age 91, right hemisphere 797.2
2534 Female, age 94, left hemisphere 742.8
2830 Female, age 67, right hemisphere 703.5
Stria terminalis, bed nucleus
nTPM: 709.0
2201 Male, age 74, unknown 733.4
2486 Female, age 94, both hemispheres 698.8
1974 Female, age 91, both hemispheres 694.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 895.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 895.6
Samples: 152

Max nTPM: 2737.5
Min nTPM: 20.3
Std nTPM: 446.2
Median nTPM: 843.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2737.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2509.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2376.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2302.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2228.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1756.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1633.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1596.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1559.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1548.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1536.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1478.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1420.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1420.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1377.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1350.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1337.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1334.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1328.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1326.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1311.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1297.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1290.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1288.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1272.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1247.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1235.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1217.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1206.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1199.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1185.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1140.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1132.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1117.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1115.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1106.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1103.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1102.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1102.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1101.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1091.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1090.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1075.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1060.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1035.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1027.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1027.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1026.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1023.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1018.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1018.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1017.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1013.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1012.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1007.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1006.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 998.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 984.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 952.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 941.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 940.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 924.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 924.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 922.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 909.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 906.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 892.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 884.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 870.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 870.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 868.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 865.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 861.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 854.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 850.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 849.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 838.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 838.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 835.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 829.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 828.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 823.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 817.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 812.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 802.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 799.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 798.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 797.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 791.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 771.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 767.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 758.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 755.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 750.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 745.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 734.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 733.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 730.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 728.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 710.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 702.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 699.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 689.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 688.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 677.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 666.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 665.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 662.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 655.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 644.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 632.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 628.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 628.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 626.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 623.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 617.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 612.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 595.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 591.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 580.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 570.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 566.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 559.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 553.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 527.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 505.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 494.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 469.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 447.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 438.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 433.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 430.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 416.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 405.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 404.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 380.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 376.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 374.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 361.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 354.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 354.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 326.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 318.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 285.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 283.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 279.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 247.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 188.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 177.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 175.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 153.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 20.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 495.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 495.2
FF:10151-102I7 76 years, female 495.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1748.8
Pig sample Sample description nTPM
Amygdala
nTPM: 1748.8
Samples: 4

Max nTPM: 2247.9
Min nTPM: 977.5
Sample A Female 1893.4
Sample B Female 2247.9
Sample C Male 1876.3
Sample D Male 977.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 220.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 220.0
Samples: 4

Max nTPM: 254.5
Min nTPM: 188.6
Sample A Male 188.6
Sample B Male 213.2
Sample C Female 254.5
Sample D Female 223.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
70429411 Antisense, RP_050614_01_F03, Mouse strain C57BL/6J (56 days, male) 0.2

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