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S100A1
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:847.7 nTPM
HPA:847.7 nTPM
GTEx:1212.0 nTPM
FANTOM5:761.6 Scaled Tags Per Million
Pig:4671.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 847.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 814.8
1981 Female, age 72, midline 867.4
2048 Male, age 55, midline 858.2
2816 Male, age 47, midline 819.6
2194 Female, age 79, both hemispheres 766.5
2565 Male, age 75, midline 762.2
Cervical spinal cord, dorsal horn
nTPM: 827.5
2296 Male, age 66, both hemispheres 969.8
2173 Female, age 72, unknown 939.8
1877 Male, age 55, unknown 803.9
2069 Male, age 47, both hemispheres 784.3
2721 Male, age 90, both hemispheres 743.1
2297 Male, age 75, both hemispheres 724.0
Cervical spinal cord, ventral horn
nTPM: 847.7
2098 Female, age 72, unknown 883.1
2068 Male, age 55, unknown 860.1
2820 Female, age 79, both hemispheres 840.6
2480 Male, age 75, both hemispheres 835.1
2295 Male, age 66, both hemispheres 834.2
2809 Male, age 90, both hemispheres 833.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1212.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1212.0
Samples: 159

Max nTPM: 2488.9
Min nTPM: 243.7
Std nTPM: 488.9
Median nTPM: 1162.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2488.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2347.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2287.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2218.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2201.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2194.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2191.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2160.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2110.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2083.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2047.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 2041.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1961.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1953.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1945.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1918.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1914.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1880.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1844.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1841.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1808.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1803.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1789.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1761.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1755.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1747.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1715.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1689.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1683.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1678.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1673.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1669.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1667.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1647.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1623.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1593.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1567.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1546.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1534.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1518.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1508.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1502.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1495.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1488.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1474.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1473.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1470.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1468.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1465.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1441.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1430.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1400.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1400.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1395.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1394.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1374.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1364.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1362.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1352.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1336.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1335.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1327.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1313.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1273.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1260.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1246.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1240.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1237.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1211.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1210.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1204.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1195.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1184.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1183.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1178.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1176.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1168.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1167.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1166.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1162.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1157.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1152.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1141.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1128.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1109.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1107.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1104.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1101.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1101.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1096.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1095.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1086.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1081.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1064.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1057.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1056.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1041.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1039.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1035.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1034.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1026.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1023.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1020.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1016.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1000.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 999.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 998.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 982.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 976.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 970.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 967.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 965.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 942.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 934.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 914.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 905.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 875.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 858.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 851.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 827.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 822.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 812.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 812.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 802.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 776.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 766.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 761.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 747.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 745.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 729.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 728.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 717.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 698.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 687.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 678.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 666.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 661.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 635.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 630.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 627.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 615.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 592.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 590.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 561.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 550.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 543.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 540.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 530.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 525.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 523.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 522.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 473.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 463.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 462.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 397.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 393.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 351.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 322.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 243.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 761.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 761.6
FF:10181-103D1 60 years, female 916.2
FF:10159-103A6 76 years, female 607.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4671.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 3316.3
Samples: 4

Max nTPM: 3945.5
Min nTPM: 3031.8
Sample A Female 3131.6
Sample B Female 3945.5
Sample C Male 3156.2
Sample D Male 3031.8
Ventral spinal cord
nTPM: 4671.3
Samples: 4

Max nTPM: 4912.0
Min nTPM: 4398.2
Sample A Female 4506.6
Sample B Female 4912.0
Sample C Male 4398.2
Sample D Male 4868.3

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