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S100A1
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  • S100A1
BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:871.2 nTPM
HPA:871.2 nTPM
FANTOM5:792.9 Scaled Tags Per Million
Pig:3292.9 nTPM
Allen mouse:0.5 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 871.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 854.3
2301 Female, age 85, both hemispheres 1043.1
2188 Female, age 91, both hemispheres 817.3
2090 Male, age 80, both hemispheres 809.8
1984 Male, age 76, both hemispheres 747.0
Dorsal cochlear nucleus
nTPM: 803.9
2187 Female, age 91, both hemispheres 845.1
2802 Male, age 74, right hemisphere 819.6
2058 Male, age 76, both hemispheres 798.6
2370 Male, age 61, both hemispheres 795.0
2378 Male, age 80, both hemispheres 761.5
Dorsal tegmental nucleus
nTPM: 831.0
2083 Male, age 80, both hemispheres 881.8
2326 Male, age 74, both hemispheres 826.7
1936 Male, age 76, left hemisphere 821.5
2358 Male, age 61, both hemispheres 793.8
Dorsolateral tegmental area
nTPM: 830.4
2751 Female, age 85, both hemispheres 933.0
2654 Male, age 80, both hemispheres 875.4
2337 Male, age 61, both hemispheres 803.1
2141 Male, age 76, both hemispheres 787.2
2360 Male, age 74, both hemispheres 753.3
Kolliker-Fuse nucleus
nTPM: 848.9
2315 Male, age 76, right hemisphere 872.7
2793 Female, age 91, left hemisphere 845.5
2163 Male, age 80, both hemispheres 828.5
Lateral lemniscal nuclei
nTPM: 776.9
2746 Female, age 85, left hemisphere 824.7
2320 Female, age 91, left hemisphere 779.2
2169 Male, age 76, both hemispheres 773.6
2453 Male, age 74, right hemisphere 753.9
2036 Male, age 80, both hemispheres 753.2
Lateral parabrachial nucleus
nTPM: 820.2
2792 Male, age 76, both hemispheres 893.6
2013 Male, age 80, both hemispheres 829.8
2139 Female, age 85, right hemisphere 812.3
2790 Male, age 61, both hemispheres 745.3
Lateral vestibular nucleus
nTPM: 853.9
2311 Male, age 80, both hemispheres 897.9
2184 Male, age 76, both hemispheres 810.0
Locus coeruleus
nTPM: 770.9
2317 Female, age 72, unknown 787.7
2720 Male, age 74, both hemispheres 785.7
2162 Male, age 80, both hemispheres 775.3
2123 Female, age 91, both hemispheres 771.8
1980 Male, age 76, both hemispheres 764.4
2014 Male, age 55, unknown 762.0
2788 Male, age 74, unknown 749.7
Medial olivary nucleus
nTPM: 871.2
1962 Male, age 76, both hemispheres 913.3
1943 Male, age 61, both hemispheres 880.5
2138 Female, age 91, both hemispheres 875.9
2851 Male, age 80, both hemispheres 815.0
Medial parabrachial nucleus
nTPM: 848.6
2170 Female, age 91, both hemispheres 928.9
2463 Female, age 85, right hemisphere 848.0
2854 Male, age 80, both hemispheres 840.2
2786 Male, age 76, both hemispheres 826.1
2156 Male, age 61, both hemispheres 799.6
Medial periolivary nuclei
nTPM: 774.6
2081 Male, age 80, both hemispheres 800.4
2791 Male, age 74, right hemisphere 793.4
2063 Male, age 76, both hemispheres 766.5
2458 Female, age 91, both hemispheres 764.9
2171 Female, age 85, both hemispheres 747.8
Motor facial nucleus
nTPM: 788.6
2126 Male, age 61, both hemispheres 822.9
2697 Female, age 85, both hemispheres 816.9
2365 Male, age 74, right hemisphere 800.3
2795 Female, age 91, both hemispheres 787.7
2062 Male, age 76, both hemispheres 770.8
2327 Male, age 80, both hemispheres 732.9
Motor trigeminal nucleus
nTPM: 803.2
2309 Male, age 76, both hemispheres 844.5
2335 Male, age 61, both hemispheres 832.3
2321 Female, age 91, both hemispheres 795.0
2560 Male, age 74, both hemispheres 776.2
2079 Male, age 80, both hemispheres 768.1
Nuclei of the trapezoid body
nTPM: 769.5
1983 Male, age 76, both hemispheres 783.4
2166 Male, age 80, both hemispheres 782.5
2159 Male, age 61, both hemispheres 781.0
2368 Female, age 91, both hemispheres 776.2
2735 Female, age 85, both hemispheres 724.4
Paramedian reticular nucleus
nTPM: 796.5
2052 Male, age 76, both hemispheres 814.2
2057 Male, age 80, both hemispheres 797.9
2050 Female, age 85, both hemispheres 794.0
2313 Male, age 61, both hemispheres 779.9
Pontine nuclei
nTPM: 782.8
2319 Female, age 91, both hemispheres 817.4
2115 Male, age 80, left hemisphere 814.8
2109 Female, age 72, unknown 810.9
2454 Male, age 74, left hemisphere 803.4
1863 Male, age 55, unknown 796.8
1968 Male, age 76, left hemisphere 768.3
2787 Female, age 85, both hemispheres 735.6
2727 Male, age 61, right hemisphere 715.3
Pontine raphe nucleus
nTPM: 780.2
2853 Male, age 76, midline 805.8
2122 Female, age 85, midline 754.6
Posteroventral cochlear nucleus
nTPM: 832.4
2341 Male, age 80, both hemispheres 926.5
2135 Female, age 91, both hemispheres 851.9
2371 Male, age 61, both hemispheres 797.1
2070 Male, age 76, both hemispheres 795.7
2752 Female, age 85, both hemispheres 790.9
Principal sensory trigeminal nucleus
nTPM: 788.8
2324 Male, age 76, both hemispheres 862.3
2367 Female, age 91, left hemisphere 809.0
2158 Male, age 61, both hemispheres 744.3
2008 Male, age 80, left hemisphere 739.6
Reticular pontine nucleus, caudal
nTPM: 779.4
2559 Male, age 74, both hemispheres 813.6
2092 Male, age 76, both hemispheres 808.6
2457 Female, age 91, both hemispheres 755.7
2332 Male, age 80, right hemisphere 739.7
Reticular pontine nucleus, oral
nTPM: 818.4
1939 Male, age 80, both hemispheres 854.9
2167 Male, age 76, both hemispheres 823.5
2012 Female, age 85, both hemispheres 822.5
2361 Male, age 74, both hemispheres 806.2
2366 Female, age 91, both hemispheres 784.8
Reticulotegmental nucleus
nTPM: 811.2
2322 Female, age 91, both hemispheres 828.0
2333 Male, age 80, both hemispheres 823.5
2325 Male, age 76, both hemispheres 809.3
2452 Male, age 74, both hemispheres 784.1
Spinal trigeminal nucleus, oral
nTPM: 782.2
2164 Male, age 80, both hemispheres 800.3
1978 Male, age 76, both hemispheres 777.7
2737 Female, age 85, both hemispheres 768.4
Subcoeruleus area
nTPM: 828.5
2369 Female, age 85, left hemisphere 949.3
1958 Male, age 80, both hemispheres 827.8
2451 Male, age 74, both hemispheres 799.2
2323 Female, age 91, left hemisphere 794.0
2089 Male, age 76, left hemisphere 772.2
Superior olive
nTPM: 783.7
2020 Male, age 76, both hemispheres 807.3
2329 Male, age 80, right hemisphere 797.3
2364 Male, age 74, right hemisphere 794.7
2561 Female, age 91, both hemispheres 771.6
1875 Female, age 85, both hemispheres 747.8
Superior vestibular nucleus
nTPM: 817.8
2061 Male, age 76, both hemispheres 838.2
2015 Male, age 80, both hemispheres 824.1
2383 Male, age 74, both hemispheres 791.1
Ventral periolivary nuclei
nTPM: 782.6
2023 Male, age 76, both hemispheres 833.6
2165 Male, age 80, both hemispheres 779.1
2130 Female, age 85, both hemispheres 760.9
2794 Female, age 91, left hemisphere 756.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 782.2
2840 Female, age 85, both hemispheres 841.5
1959 Male, age 76, both hemispheres 783.6
2161 Male, age 80, both hemispheres 778.3
2449 Male, age 74, both hemispheres 768.9
2456 Female, age 91, both hemispheres 768.5
2359 Male, age 61, both hemispheres 752.5

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 792.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 792.9
FF:10182-103D2 60 years, female 871.5
FF:10165-103B3 76 years, female 714.3
Pons
Scaled Tags Per Million: 688.6
FF:10033-101E6 18-54 years, mixed 688.6

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 3292.9
Pig sample Sample description nTPM
Pons
nTPM: 3292.9
Samples: 4

Max nTPM: 4127.6
Min nTPM: 2368.5
Sample A Female 2555.8
Sample B Female 2368.5
Sample C Male 4119.8
Sample D Male 4127.6

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 0.5
70429411 Antisense, RP_050614_01_F03, Mouse strain C57BL/6J (56 days, male) 0.5

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