MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:894.8 nTPM
HPA:894.8 nTPM
GTEx:1164.0 nTPM
FANTOM5:785.3 Scaled Tags Per Million
Pig:3080.7 nTPM
Mouse:224.0 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 894.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 837.4
2828 Female, age 72, unknown 891.2
1833 Male, age 53, unknown 863.9
1870 Female, age 42, unknown 863.2
2586 Male, age 75, left hemisphere 846.0
2411 Female, age 72, unknown 839.1
1830 Male, age 51, unknown 831.2
1827 Male, age 72, unknown 815.5
2019 Male, age 18, unknown 811.6
2666 Male, age 74, left hemisphere 809.2
2219 Male, age 76, both hemispheres 802.9
Dorsal raphe nucleus
nTPM: 803.5
2750 Male, age 76, both hemispheres 863.8
1828 Male, age 53, unknown 803.6
2016 Female, age 72, unknown 790.5
2298 Female, age 72, unknown 785.2
2047 Male, age 72, unknown 774.1
Inferior colliculus
nTPM: 796.4
2849 Male, age 72, unknown 825.9
1848 Female, age 42, unknown 824.9
1890 Male, age 53, unknown 784.8
2097 Female, age 72, unknown 750.0
Median raphe nucleus
nTPM: 811.6
2220 Male, age 76, midline 811.6
Pedunculopontine tegmental nucleus
nTPM: 809.8
2334 Male, age 80, both hemispheres 862.1
1921 Female, age 85, both hemispheres 788.2
2338 Male, age 61, both hemispheres 779.2
Periaquaductal grey, anterior
nTPM: 776.8
1795 Male, age 51, unknown 788.1
1947 Male, age 18, unknown 771.7
2502 Female, age 75, unknown 770.6
Periaquaductal grey, dorsal
nTPM: 788.8
2850 Male, age 76, both hemispheres 811.7
2464 Female, age 72, unknown 797.7
1831 Male, age 72, unknown 777.7
1840 Male, age 53, unknown 767.9
Periaquaductal grey, lateral
nTPM: 805.2
2053 Male, age 18, unknown 831.8
2140 Male, age 76, both hemispheres 812.5
2272 Male, age 74, both hemispheres 771.3
Pretectal area
nTPM: 808.8
2667 Female, age 75, unknown 874.7
1815 Male, age 53, unknown 851.6
1817 Female, age 42, unknown 846.4
2316 Male, age 76, right hemisphere 834.8
2825 Male, age 18, unknown 826.5
2224 Female, age 72, unknown 807.9
1944 Female, age 72, unknown 794.9
1816 Male, age 51, unknown 784.9
2007 Male, age 72, unknown 776.2
2273 Male, age 74, both hemispheres 766.5
2407 Male, age 75, both hemispheres 732.3
Red nucleus
nTPM: 894.8
2227 Male, age 72, unknown 962.7
2769 Male, age 72, unknown 948.2
1954 Female, age 42, unknown 941.4
2503 Female, age 72, unknown 940.5
1821 Female, age 72, unknown 938.7
1904 Male, age 53, unknown 919.6
2823 Male, age 76, right hemisphere 917.2
1865 Male, age 51, unknown 899.5
2588 Male, age 74, left hemisphere 857.2
2725 Female, age 75, unknown 826.0
2785 Male, age 18, unknown 807.8
2584 Male, age 75, left hemisphere 778.7
Substantia nigra
nTPM: 814.6
2699 Male, age 18, unknown 919.5
1916 Female, age 42, unknown 868.3
1851 Male, age 51, unknown 834.8
2665 Male, age 74, both hemispheres 816.7
1889 Female, age 72, unknown 815.0
2590 Female, age 75, unknown 793.0
2583 Male, age 75, right hemisphere 786.9
2409 Female, age 72, unknown 782.3
1941 Male, age 53, unknown 775.1
2241 Male, age 72, unknown 754.9
Superior colliculus
nTPM: 805.8
1913 Female, age 42, unknown 852.6
1995 Male, age 72, unknown 844.2
1796 Male, age 53, unknown 817.7
1839 Male, age 51, unknown 817.7
2668 Female, age 75, unknown 816.4
2587 Male, age 74, left hemisphere 812.4
2087 Female, age 72, unknown 789.8
1895 Male, age 76, right hemisphere 775.4
2261 Male, age 18, unknown 768.4
2664 Male, age 75, both hemispheres 763.1
Ventral tegmental area
nTPM: 831.0
2223 Female, age 72, unknown 926.2
2218 Male, age 76, both hemispheres 836.4
2410 Female, age 72, unknown 823.3
1915 Female, age 42, unknown 814.4
2021 Male, age 53, unknown 793.4
1942 Male, age 51, unknown 792.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1164.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1164.0
Samples: 139

Max nTPM: 3039.0
Min nTPM: 188.5
Std nTPM: 472.6
Median nTPM: 1118.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3039.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2471.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2368.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2225.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2189.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 2098.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2083.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1995.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1994.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1957.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1910.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 785.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 785.3
FF:10158-103A5 76 years, female 785.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 3080.7
Pig sample Sample description nTPM
Midbrain
nTPM: 3050.8
Samples: 4

Max nTPM: 5611.3
Min nTPM: 1432.2
Sample A Female 5611.3
Sample B Female 3210.3
Sample C Male 1949.3
Sample D Male 1432.2
Periaqueductal gray
nTPM: 2739.8
Samples: 3

Max nTPM: 3107.3
Min nTPM: 2365.0
Sample B Female 3107.3
Sample C Male 2747.2
Sample D Male 2365.0
Substantia nigra
nTPM: 3080.7
Samples: 4

Max nTPM: 4051.0
Min nTPM: 2486.9
Sample A Female 4051.0
Sample B Female 2486.9
Sample C Male 2809.2
Sample D Male 2975.8
Superior colliculi
nTPM: 2165.6
Samples: 4

Max nTPM: 2805.7
Min nTPM: 1161.2
Sample A Female 2805.7
Sample B Female 1161.2
Sample C Male 2184.0
Sample D Male 2511.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 224.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 224.0
Samples: 4

Max nTPM: 235.5
Min nTPM: 217.2
Sample A Male 235.5
Sample B Male 217.2
Sample C Female 217.2
Sample D Female 226.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70429411 Antisense, RP_050614_01_F03, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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