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S100A1
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  • S100A1
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:882.9 nTPM
HPA:882.9 nTPM
FANTOM5:690.0 Scaled Tags Per Million
Pig:2683.5 nTPM
Mouse:225.7 nTPM
Allen mouse:0.4 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 882.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 764.5
2497 Male, age 66, unknown 802.2
2032 Female, age 42, unknown 782.8
2396 Male, age 61, right hemisphere 708.4
Centromedial thalamic nucleus
nTPM: 789.3
2401 Male, age 76, right hemisphere 842.7
2279 Female, age 85, left hemisphere 735.9
Habenula
nTPM: 807.4
2276 Male, age 66, unknown 838.2
1957 Male, age 80, both hemispheres 809.9
2203 Male, age 61, left hemisphere 804.3
2252 Male, age 62, unknown 777.2
Lateral geniculate body
nTPM: 870.7
2857 Male, age 74, right hemisphere 929.6
2841 Male, age 80, both hemispheres 907.0
2035 Female, age 72, unknown 882.4
2575 Female, age 94, right hemisphere 879.7
2399 Male, age 61, left hemisphere 874.0
2659 Male, age 66, unknown 857.9
2106 Female, age 67, right hemisphere 847.9
1953 Male, age 62, unknown 787.4
Lateral thalamic nuclei
nTPM: 859.1
2573 Female, age 94, left hemisphere 932.6
2661 Female, age 72, unknown 874.0
2765 Female, age 67, both hemispheres 851.1
2577 Male, age 74, both hemispheres 838.6
1903 Male, age 76, left hemisphere 799.0
Medial dorsal thalamic nucleus
nTPM: 839.8
2572 Female, age 94, right hemisphere 1038.5
2492 Male, age 75, right hemisphere 863.1
2283 Male, age 80, right hemisphere 851.0
2576 Male, age 74, both hemispheres 848.9
2660 Female, age 72, unknown 846.0
2498 Male, age 66, unknown 844.0
1859 Male, age 76, both hemispheres 838.7
2402 Female, age 67, both hemispheres 829.7
1810 Male, age 48, unknown 823.4
2026 Male, age 62, unknown 821.6
2039 Female, age 72, unknown 800.6
1930 Female, age 42, unknown 764.9
1971 Male, age 61, right hemisphere 747.5
Medial geniculate body
nTPM: 857.9
2650 Female, age 94, left hemisphere 930.8
2571 Male, age 75, right hemisphere 895.3
2217 Female, age 72, unknown 873.9
2207 Male, age 80, right hemisphere 865.6
2657 Male, age 74, right hemisphere 850.3
2049 Male, age 76, both hemispheres 808.0
1811 Female, age 42, unknown 781.5
Nucleus reuniens
nTPM: 820.7
2205 Male, age 80, left hemisphere 882.7
2212 Female, age 67, left hemisphere 811.8
2210 Female, age 85, left hemisphere 767.7
Nucleus rhomboideus
nTPM: 797.9
2206 Male, age 80, both hemispheres 853.2
2280 Female, age 85, left hemisphere 784.2
2213 Female, age 67, left hemisphere 756.3
Posterior thalamic nucleus
nTPM: 882.9
2649 Female, age 94, both hemispheres 996.0
2655 Male, age 74, right hemisphere 874.8
2266 Male, age 76, right hemisphere 841.0
2495 Female, age 67, right hemisphere 819.9
Pulvinar
nTPM: 851.6
2724 Male, age 74, right hemisphere 958.8
1932 Male, age 80, right hemisphere 912.2
2582 Female, age 72, unknown 866.0
2398 Male, age 61, left hemisphere 854.9
2499 Male, age 66, unknown 847.1
2496 Female, age 67, right hemisphere 838.3
2214 Male, age 76, right hemisphere 823.1
1972 Male, age 62, unknown 808.3
1899 Female, age 42, unknown 807.3
1929 Male, age 48, unknown 800.4
Subthalamic nucleus
nTPM: 840.7
2282 Male, age 61, both hemispheres 937.8
2216 Male, age 48, unknown 930.3
2124 Male, age 62, unknown 861.6
2056 Female, age 72, unknown 850.1
2275 Male, age 66, unknown 830.7
2779 Female, age 42, unknown 798.2
2658 Male, age 74, both hemispheres 762.5
2406 Female, age 72, unknown 754.2
Ventral posterolateral thalamic nucleus
nTPM: 859.0
2570 Male, age 75, right hemisphere 948.9
2197 Male, age 80, both hemispheres 869.2
2740 Male, age 76, right hemisphere 868.4
2581 Female, age 72, unknown 839.7
2397 Male, age 61, right hemisphere 818.2
2578 Male, age 74, both hemispheres 809.4
Ventral posteromedial thalamic nucleus
nTPM: 856.9
2281 Male, age 75, right hemisphere 967.6
2127 Male, age 76, right hemisphere 878.1
2758 Male, age 80, both hemispheres 874.2
2653 Male, age 74, both hemispheres 801.5
2202 Male, age 61, left hemisphere 763.1
Ventral thalamic nuclei
nTPM: 839.4
2204 Male, age 80, both hemispheres 891.6
2858 Female, age 72, unknown 891.5
1860 Male, age 76, both hemispheres 860.6
2580 Male, age 66, unknown 847.4
2285 Male, age 62, unknown 843.5
2291 Female, age 72, unknown 837.0
1845 Male, age 48, unknown 812.6
2652 Male, age 74, left hemisphere 795.3
1912 Female, age 42, unknown 775.3
Ventromedial nucleus
nTPM: 695.6
1982 Female, age 72, unknown 705.6
1822 Female, age 42, unknown 685.6
Zona incerta
nTPM: 793.9
2208 Male, age 80, right hemisphere 852.8
2663 Female, age 72, unknown 798.2
2403 Male, age 62, unknown 794.4
2822 Male, age 74, right hemisphere 792.4
2215 Male, age 66, unknown 731.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 690.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 690.0
FF:10154-103A1 76 years, female 690.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2683.5
Pig sample Sample description nTPM
Thalamus
nTPM: 2683.5
Samples: 4

Max nTPM: 3156.3
Min nTPM: 1673.8
Sample A Female 3156.3
Sample B Female 1673.8
Sample C Male 2756.5
Sample D Male 3147.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 225.7
Mouse sample Sample description nTPM
Thalamus
nTPM: 225.7
Samples: 4

Max nTPM: 263.5
Min nTPM: 198.1
Sample A Male 230.6
Sample B Male 210.6
Sample C Female 263.5
Sample D Female 198.1

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.4
70429411 Antisense, RP_050614_01_F03, Mouse strain C57BL/6J (56 days, male) 0.4

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