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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:538.9 nTPM
HPA:538.9 nTPM
GTEx:702.5 nTPM
FANTOM5:356.9 Scaled Tags Per Million
Pig:105.3 nTPM
Mouse:427.5 nTPM
Allen mouse:2.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 538.9
Sample id Sample description nTPM
Amygdala
nTPM: 531.8
2814 Male, age 76, right hemisphere 545.3
2514 Male, age 75, right hemisphere 535.2
2695 Female, age 67, right hemisphere 527.9
1987 Female, age 91, left hemisphere 525.4
2517 Female, age 94, left hemisphere 525.1
Basal amygdala
nTPM: 533.9
2243 Female, age 91, right hemisphere 547.0
1955 Male, age 76, both hemispheres 542.6
2110 Male, age 80, left hemisphere 541.5
2609 Male, age 75, right hemisphere 529.2
2685 Female, age 94, left hemisphere 525.6
2827 Female, age 67, right hemisphere 517.3
Central amygdala
nTPM: 529.9
2826 Female, age 94, left hemisphere 538.5
1905 Male, age 76, both hemispheres 538.3
2239 Male, age 80, left hemisphere 535.2
2701 Female, age 91, right hemisphere 524.0
2515 Male, age 75, right hemisphere 513.3
Corticomedial amygdala
nTPM: 538.9
2242 Female, age 91, right hemisphere 549.8
2829 Male, age 80, left hemisphere 546.4
2240 Male, age 76, both hemispheres 541.4
2535 Female, age 67, right hemisphere 540.5
2429 Female, age 94, left hemisphere 535.5
2428 Male, age 75, right hemisphere 519.7
Lateral amygdala
nTPM: 524.6
1883 Male, age 76, both hemispheres 549.2
2534 Female, age 94, left hemisphere 536.8
2516 Male, age 75, right hemisphere 524.6
2830 Female, age 67, right hemisphere 514.6
2256 Male, age 80, left hemisphere 512.8
2255 Female, age 91, right hemisphere 509.7
Stria terminalis, bed nucleus
nTPM: 532.6
1974 Female, age 91, both hemispheres 546.7
2486 Female, age 94, both hemispheres 532.6
2201 Male, age 74, unknown 518.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 702.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 702.5
Samples: 152

Max nTPM: 2708.4
Min nTPM: 278.6
Std nTPM: 294.6
Median nTPM: 665.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2708.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2055.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1696.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1669.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1333.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1295.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1204.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1087.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1048.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1003.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 985.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 985.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 971.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 970.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 957.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 943.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 940.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 926.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 914.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 911.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 902.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 900.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 892.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 889.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 876.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 874.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 868.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 859.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 846.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 815.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 813.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 812.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 808.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 803.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 796.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 793.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 793.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 791.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 788.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 782.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 779.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 774.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 774.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 760.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 746.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 729.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 728.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 725.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 724.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 720.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 712.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 705.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 704.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 703.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 702.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 702.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 700.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 697.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 697.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 695.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 693.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 692.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 690.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 689.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 688.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 688.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 685.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 684.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 682.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 681.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 681.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 673.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 671.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 671.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 666.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 665.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 665.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 663.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 662.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 660.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 659.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 658.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 658.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 658.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 643.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 633.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 631.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 630.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 625.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 624.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 606.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 603.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 602.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 598.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 590.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 590.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 589.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 589.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 587.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 585.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 585.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 584.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 583.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 575.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 569.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 565.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 563.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 562.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 561.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 561.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 560.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 548.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 542.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 541.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 541.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 539.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 537.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 536.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 532.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 524.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 523.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 510.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 508.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 505.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 504.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 502.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 500.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 492.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 491.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 483.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 479.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 473.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 472.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 461.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 456.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 454.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 439.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 431.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 428.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 421.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 417.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 413.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 402.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 388.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 386.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 382.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 359.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 352.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 347.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 339.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 325.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 278.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 356.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 356.9
FF:10151-102I7 76 years, female 356.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 105.3
Pig sample Sample description nTPM
Amygdala
nTPM: 105.3
Samples: 4

Max nTPM: 144.8
Min nTPM: 75.6
Sample A Female 144.8
Sample B Female 109.2
Sample C Male 91.4
Sample D Male 75.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 427.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 427.5
Samples: 4

Max nTPM: 437.7
Min nTPM: 408.4
Sample A Male 408.4
Sample B Male 430.3
Sample C Female 437.7
Sample D Female 433.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.2
68076547 Antisense, RP_040923_02_F08, Mouse strain C57BL/6J (56 days, male) 3.2
70918976 Antisense, RP_050712_04_H06, Mouse strain C57BL/6J (56 days, male) 1.3

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