MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:538.3 nTPM
HPA:538.3 nTPM
GTEx:517.1 nTPM
FANTOM5:238.8 Scaled Tags Per Million
Pig:163.9 nTPM
Mouse:441.2 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 538.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 521.1
1870 Female, age 42, unknown 533.5
2666 Male, age 74, left hemisphere 529.4
1827 Male, age 72, unknown 528.4
2828 Female, age 72, unknown 525.9
2019 Male, age 18, unknown 525.0
2219 Male, age 76, both hemispheres 521.0
1833 Male, age 53, unknown 519.3
1830 Male, age 51, unknown 512.7
2411 Female, age 72, unknown 510.9
2586 Male, age 75, left hemisphere 504.9
Dorsal raphe nucleus
nTPM: 518.6
1828 Male, age 53, unknown 525.7
2047 Male, age 72, unknown 522.0
2750 Male, age 76, both hemispheres 519.7
2298 Female, age 72, unknown 516.4
2016 Female, age 72, unknown 509.0
Inferior colliculus
nTPM: 523.2
1890 Male, age 53, unknown 529.2
2849 Male, age 72, unknown 522.5
1848 Female, age 42, unknown 521.1
2097 Female, age 72, unknown 520.0
Median raphe nucleus
nTPM: 538.3
2220 Male, age 76, midline 538.3
Pedunculopontine tegmental nucleus
nTPM: 535.6
2338 Male, age 61, both hemispheres 543.1
2334 Male, age 80, both hemispheres 536.0
1921 Female, age 85, both hemispheres 527.9
Periaquaductal grey, anterior
nTPM: 520.7
1795 Male, age 51, unknown 524.2
1947 Male, age 18, unknown 520.6
2502 Female, age 75, unknown 517.3
Periaquaductal grey, dorsal
nTPM: 515.1
2850 Male, age 76, both hemispheres 527.8
1840 Male, age 53, unknown 516.9
1831 Male, age 72, unknown 513.7
2464 Female, age 72, unknown 502.1
Periaquaductal grey, lateral
nTPM: 512.3
2140 Male, age 76, both hemispheres 515.8
2053 Male, age 18, unknown 512.4
2272 Male, age 74, both hemispheres 508.7
Pretectal area
nTPM: 531.2
1944 Female, age 72, unknown 557.2
2007 Male, age 72, unknown 547.3
1817 Female, age 42, unknown 546.7
1816 Male, age 51, unknown 542.5
2667 Female, age 75, unknown 534.9
1815 Male, age 53, unknown 531.7
2407 Male, age 75, both hemispheres 524.5
2825 Male, age 18, unknown 517.6
2224 Female, age 72, unknown 517.5
2273 Male, age 74, both hemispheres 511.7
2316 Male, age 76, right hemisphere 511.3
Red nucleus
nTPM: 522.0
2785 Male, age 18, unknown 534.9
2725 Female, age 75, unknown 533.4
2584 Male, age 75, left hemisphere 524.7
2823 Male, age 76, right hemisphere 523.6
1865 Male, age 51, unknown 522.7
2503 Female, age 72, unknown 522.7
1954 Female, age 42, unknown 520.6
2588 Male, age 74, left hemisphere 520.6
1821 Female, age 72, unknown 520.3
2769 Male, age 72, unknown 515.9
2227 Male, age 72, unknown 514.9
1904 Male, age 53, unknown 509.3
Substantia nigra
nTPM: 533.4
1916 Female, age 42, unknown 562.7
1889 Female, age 72, unknown 550.8
2665 Male, age 74, both hemispheres 536.8
2241 Male, age 72, unknown 534.8
1941 Male, age 53, unknown 534.3
1851 Male, age 51, unknown 530.8
2409 Female, age 72, unknown 528.1
2699 Male, age 18, unknown 524.6
2590 Female, age 75, unknown 516.5
2583 Male, age 75, right hemisphere 514.3
Superior colliculus
nTPM: 519.1
2087 Female, age 72, unknown 535.5
1796 Male, age 53, unknown 526.9
1895 Male, age 76, right hemisphere 524.0
2668 Female, age 75, unknown 521.7
2587 Male, age 74, left hemisphere 521.3
2261 Male, age 18, unknown 520.5
1913 Female, age 42, unknown 516.3
1839 Male, age 51, unknown 511.0
1995 Male, age 72, unknown 507.1
2664 Male, age 75, both hemispheres 506.8
Ventral tegmental area
nTPM: 523.8
1915 Female, age 42, unknown 534.1
2218 Male, age 76, both hemispheres 531.8
1942 Male, age 51, unknown 526.3
2223 Female, age 72, unknown 525.4
2410 Female, age 72, unknown 513.7
2021 Male, age 53, unknown 511.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 517.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 517.1
Samples: 139

Max nTPM: 977.5
Min nTPM: 298.4
Std nTPM: 134.2
Median nTPM: 493.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 977.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 924.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 884.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 829.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 825.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 814.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 784.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 754.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 753.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 750.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 743.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 238.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 238.8
FF:10158-103A5 76 years, female 238.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 163.9
Pig sample Sample description nTPM
Midbrain
nTPM: 151.5
Samples: 4

Max nTPM: 173.4
Min nTPM: 135.6
Sample A Female 173.4
Sample B Female 149.5
Sample C Male 147.4
Sample D Male 135.6
Periaqueductal gray
nTPM: 116.7
Samples: 3

Max nTPM: 129.2
Min nTPM: 100.1
Sample B Female 129.2
Sample C Male 120.8
Sample D Male 100.1
Substantia nigra
nTPM: 139.8
Samples: 4

Max nTPM: 206.8
Min nTPM: 93.2
Sample A Female 206.8
Sample B Female 136.4
Sample C Male 122.9
Sample D Male 93.2
Superior colliculi
nTPM: 163.9
Samples: 4

Max nTPM: 203.2
Min nTPM: 137.1
Sample A Female 203.2
Sample B Female 139.9
Sample C Male 175.4
Sample D Male 137.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 441.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 441.2
Samples: 4

Max nTPM: 473.2
Min nTPM: 389.4
Sample A Male 467.1
Sample B Male 435.0
Sample C Female 389.4
Sample D Female 473.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68076547 Antisense, RP_040923_02_F08, Mouse strain C57BL/6J (56 days, male) 1.5
70918976 Antisense, RP_050712_04_H06, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.