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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:543.4 nTPM
HPA:543.4 nTPM
FANTOM5:250.1 Scaled Tags Per Million
Pig:168.6 nTPM
Mouse:488.2 nTPM
Allen mouse:1.2 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 543.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 527.6
2032 Female, age 42, unknown 530.2
2396 Male, age 61, right hemisphere 526.5
2497 Male, age 66, unknown 526.1
Centromedial thalamic nucleus
nTPM: 518.6
2401 Male, age 76, right hemisphere 541.6
2279 Female, age 85, left hemisphere 495.6
Habenula
nTPM: 531.5
1957 Male, age 80, both hemispheres 547.4
2203 Male, age 61, left hemisphere 541.6
2276 Male, age 66, unknown 521.8
2252 Male, age 62, unknown 515.1
Lateral geniculate body
nTPM: 543.4
2106 Female, age 67, right hemisphere 573.5
1953 Male, age 62, unknown 568.6
2399 Male, age 61, left hemisphere 559.1
2035 Female, age 72, unknown 539.7
2857 Male, age 74, right hemisphere 530.8
2659 Male, age 66, unknown 527.3
2841 Male, age 80, both hemispheres 525.2
2575 Female, age 94, right hemisphere 523.4
Lateral thalamic nuclei
nTPM: 533.0
1903 Male, age 76, left hemisphere 548.2
2573 Female, age 94, left hemisphere 531.4
2765 Female, age 67, both hemispheres 531.3
2661 Female, age 72, unknown 530.6
2577 Male, age 74, both hemispheres 523.6
Medial dorsal thalamic nucleus
nTPM: 533.9
1859 Male, age 76, both hemispheres 565.0
1971 Male, age 61, right hemisphere 551.8
2498 Male, age 66, unknown 549.6
2572 Female, age 94, right hemisphere 540.3
2283 Male, age 80, right hemisphere 536.1
2026 Male, age 62, unknown 533.7
1810 Male, age 48, unknown 531.5
2660 Female, age 72, unknown 527.3
1930 Female, age 42, unknown 525.8
2576 Male, age 74, both hemispheres 525.2
2039 Female, age 72, unknown 520.2
2492 Male, age 75, right hemisphere 517.5
2402 Female, age 67, both hemispheres 516.7
Medial geniculate body
nTPM: 530.0
1811 Female, age 42, unknown 545.4
2207 Male, age 80, right hemisphere 537.5
2650 Female, age 94, left hemisphere 533.6
2657 Male, age 74, right hemisphere 528.6
2217 Female, age 72, unknown 525.4
2049 Male, age 76, both hemispheres 522.5
2571 Male, age 75, right hemisphere 516.9
Nucleus reuniens
nTPM: 527.4
2212 Female, age 67, left hemisphere 545.4
2205 Male, age 80, left hemisphere 528.5
2210 Female, age 85, left hemisphere 508.3
Nucleus rhomboideus
nTPM: 520.6
2206 Male, age 80, both hemispheres 543.9
2213 Female, age 67, left hemisphere 513.5
2280 Female, age 85, left hemisphere 504.4
Posterior thalamic nucleus
nTPM: 537.2
2649 Female, age 94, both hemispheres 568.5
2495 Female, age 67, right hemisphere 528.9
2266 Male, age 76, right hemisphere 526.1
2655 Male, age 74, right hemisphere 525.2
Pulvinar
nTPM: 540.8
1932 Male, age 80, right hemisphere 563.7
1972 Male, age 62, unknown 550.7
2398 Male, age 61, left hemisphere 549.9
2724 Male, age 74, right hemisphere 546.0
1929 Male, age 48, unknown 538.5
2214 Male, age 76, right hemisphere 538.5
2582 Female, age 72, unknown 534.0
2496 Female, age 67, right hemisphere 530.7
1899 Female, age 42, unknown 529.2
2499 Male, age 66, unknown 526.4
Subthalamic nucleus
nTPM: 525.1
2658 Male, age 74, both hemispheres 538.4
2124 Male, age 62, unknown 536.6
2406 Female, age 72, unknown 532.2
2282 Male, age 61, both hemispheres 529.7
2275 Male, age 66, unknown 528.9
2779 Female, age 42, unknown 520.0
2216 Male, age 48, unknown 512.4
2056 Female, age 72, unknown 502.8
Ventral posterolateral thalamic nucleus
nTPM: 534.1
2397 Male, age 61, right hemisphere 545.2
2740 Male, age 76, right hemisphere 544.7
2197 Male, age 80, both hemispheres 542.6
2570 Male, age 75, right hemisphere 530.5
2578 Male, age 74, both hemispheres 526.1
2581 Female, age 72, unknown 515.7
Ventral posteromedial thalamic nucleus
nTPM: 533.4
2758 Male, age 80, both hemispheres 545.2
2202 Male, age 61, left hemisphere 545.1
2653 Male, age 74, both hemispheres 530.1
2127 Male, age 76, right hemisphere 526.2
2281 Male, age 75, right hemisphere 520.3
Ventral thalamic nuclei
nTPM: 535.1
1860 Male, age 76, both hemispheres 556.5
1845 Male, age 48, unknown 553.1
2204 Male, age 80, both hemispheres 539.6
1912 Female, age 42, unknown 537.4
2858 Female, age 72, unknown 537.4
2285 Male, age 62, unknown 532.4
2580 Male, age 66, unknown 531.5
2652 Male, age 74, left hemisphere 516.3
2291 Female, age 72, unknown 511.8
Ventromedial nucleus
nTPM: 523.4
1982 Female, age 72, unknown 534.1
1822 Female, age 42, unknown 512.7
Zona incerta
nTPM: 524.3
2822 Male, age 74, right hemisphere 537.8
2215 Male, age 66, unknown 528.4
2208 Male, age 80, right hemisphere 527.1
2663 Female, age 72, unknown 517.5
2403 Male, age 62, unknown 510.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 250.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 250.1
FF:10154-103A1 76 years, female 250.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 168.6
Pig sample Sample description nTPM
Thalamus
nTPM: 168.6
Samples: 4

Max nTPM: 212.1
Min nTPM: 132.7
Sample A Female 212.1
Sample B Female 138.3
Sample C Male 191.3
Sample D Male 132.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 488.2
Mouse sample Sample description nTPM
Thalamus
nTPM: 488.3
Samples: 4

Max nTPM: 506.6
Min nTPM: 460.9
Sample A Male 506.6
Sample B Male 489.1
Sample C Female 496.4
Sample D Female 460.9

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 1.2
68076547 Antisense, RP_040923_02_F08, Mouse strain C57BL/6J (56 days, male) 2.1
70918976 Antisense, RP_050712_04_H06, Mouse strain C57BL/6J (56 days, male) 0.3

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