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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:524.1 nTPM
HPA:524.1 nTPM
GTEx:375.5 nTPM
FANTOM5:336.6 Scaled Tags Per Million
Pig:148.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 524.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 524.1
2194 Female, age 79, both hemispheres 535.0
1981 Female, age 72, midline 525.4
2565 Male, age 75, midline 522.2
2816 Male, age 47, midline 520.2
2048 Male, age 55, midline 517.8
Cervical spinal cord, dorsal horn
nTPM: 522.5
2173 Female, age 72, unknown 533.5
2721 Male, age 90, both hemispheres 526.3
2296 Male, age 66, both hemispheres 521.9
2297 Male, age 75, both hemispheres 518.7
2069 Male, age 47, both hemispheres 517.7
1877 Male, age 55, unknown 517.3
Cervical spinal cord, ventral horn
nTPM: 523.2
2068 Male, age 55, unknown 536.9
2820 Female, age 79, both hemispheres 534.3
2480 Male, age 75, both hemispheres 523.3
2809 Male, age 90, both hemispheres 520.3
2295 Male, age 66, both hemispheres 514.0
2098 Female, age 72, unknown 510.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 375.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 375.5
Samples: 159

Max nTPM: 665.0
Min nTPM: 159.2
Std nTPM: 95.4
Median nTPM: 362.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 665.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 633.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 615.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 586.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 565.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 556.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 551.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 550.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 549.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 544.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 543.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 533.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 532.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 525.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 519.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 518.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 516.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 514.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 511.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 502.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 495.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 492.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 490.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 485.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 482.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 480.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 474.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 470.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 468.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 465.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 458.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 456.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 454.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 454.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 441.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 441.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 441.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 437.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 436.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 434.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 434.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 430.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 428.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 423.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 420.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 418.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 415.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 415.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 414.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 411.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 411.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 409.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 404.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 403.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 401.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 401.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 396.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 395.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 395.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 388.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 384.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 383.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 382.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 379.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 378.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 377.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 377.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 377.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 375.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 373.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 372.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 371.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 371.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 370.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 369.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 368.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 366.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 365.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 362.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 362.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 362.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 362.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 361.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 359.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 353.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 352.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 350.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 349.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 346.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 345.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 344.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 344.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 344.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 339.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 339.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 338.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 337.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 333.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 331.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 331.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 331.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 331.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 329.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 329.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 328.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 323.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 322.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 322.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 320.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 319.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 319.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 318.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 315.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 315.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 311.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 310.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 309.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 308.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 306.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 304.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 304.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 303.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 300.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 299.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 299.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 299.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 299.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 296.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 295.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 294.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 292.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 291.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 290.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 286.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 285.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 284.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 283.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 283.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 281.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 280.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 280.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 279.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 269.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 267.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 265.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 258.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 258.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 254.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 252.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 252.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 250.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 249.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 248.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 228.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 216.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 207.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 177.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 169.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 159.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 336.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 336.6
FF:10181-103D1 60 years, female 412.3
FF:10159-103A6 76 years, female 260.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 148.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 136.9
Samples: 4

Max nTPM: 150.8
Min nTPM: 114.7
Sample A Female 146.9
Sample B Female 135.1
Sample C Male 150.8
Sample D Male 114.7
Ventral spinal cord
nTPM: 148.6
Samples: 4

Max nTPM: 165.8
Min nTPM: 128.6
Sample A Female 128.6
Sample B Female 165.8
Sample C Male 162.7
Sample D Male 137.2

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