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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:340.0 nTPM
GTEx:557.1 nTPM
FANTOM5:84.1 Scaled Tags Per Million
Pig:92.1 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 340.0
Sample id Sample description nTPM
Putamen
nTPM: 340.0
2647 Male, age 75, left hemisphere 384.0
2489 Female, age 72, unknown 359.4
2482 Female, age 94, left hemisphere 344.8
2466 Female, age 79, unknown 330.3
1829 Male, age 74, unknown 325.5
1937 Female, age 91, right hemisphere 320.7
1838 Male, age 80, right hemisphere 314.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 557.1
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 557.1
Samples: 205

Max nTPM: 1975.2
Min nTPM: 58.8
Std nTPM: 340.5
Median nTPM: 463.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 1975.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 1704.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 1667.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 1476.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1437.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1366.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 1332.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 1301.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 1301.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 1271.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 1262.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 1179.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 1174.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 1167.6
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 1147.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 1132.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 1129.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 1123.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 1092.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 1087.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 1083.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 1078.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 1076.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 1068.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 1057.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 1013.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1007.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 923.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 919.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 902.3
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 875.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 870.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 867.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 865.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 865.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 824.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 816.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 807.4
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 807.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 806.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 800.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 786.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 767.3
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 749.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 748.3
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 741.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 740.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 720.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 719.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 717.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 710.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 707.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 702.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 701.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 701.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 694.7
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 692.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 692.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 681.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 671.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 665.6
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 664.7
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 660.2
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 656.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 655.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 651.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 637.1
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 613.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 606.4
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 603.8
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 599.6
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 597.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 594.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 592.6
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 575.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 572.2
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 570.5
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 559.8
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 558.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 549.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 546.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 526.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 517.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 517.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 516.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 515.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 509.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 508.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 506.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 505.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 504.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 504.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 499.9
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 499.3
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 479.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 478.4
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 474.9
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 473.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 473.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 473.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 464.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 464.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 463.4
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 463.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 459.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 448.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 444.5
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 443.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 440.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 440.5
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 437.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 436.6
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 432.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 428.4
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 428.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 427.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 422.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 422.3
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 421.6
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 421.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 420.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 420.2
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 419.8
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 413.0
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 412.3
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 407.8
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 407.4
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 404.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 404.3
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 400.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 400.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 399.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 393.2
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 392.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 390.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 386.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 379.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 377.5
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 374.7
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 373.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 363.6
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 361.9
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 359.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 359.5
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 355.2
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 350.0
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 349.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 341.3
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 338.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 332.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 329.2
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 320.5
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 319.5
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 318.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 315.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 299.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 298.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 298.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 296.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 290.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 289.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 289.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 289.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 283.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 277.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 276.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 273.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 267.1
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 265.7
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 265.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 252.6
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 250.4
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 250.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 247.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 243.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 243.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 230.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 229.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 228.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 226.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 217.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 215.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 209.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 209.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 208.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 206.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 206.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 205.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 201.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 196.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 184.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 184.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 174.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 161.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 154.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 151.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 147.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 140.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 140.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 134.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 133.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 106.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 86.5
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 76.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 58.8
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 84.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 84.1
FF:10176-103C5 60 years, female 84.1

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 92.1
Pig sample Sample description nTPM
Putamen
nTPM: 92.2
Samples: 4

Max nTPM: 110.0
Min nTPM: 65.4
Sample A Female 93.0
Sample B Female 65.4
Sample C Male 110.0
Sample D Male 100.2

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.