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RPS21
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1374.5 nTPM
HPA:1374.5 nTPM
GTEx:2062.6 nTPM
FANTOM5:283.6 Scaled Tags Per Million
Pig:125.6 nTPM
Mouse:1640.9 nTPM
Allen mouse:7.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1374.5
Sample id Sample description nTPM
Amygdala
nTPM: 1374.5
2517 Female, age 94, left hemisphere 1403.2
2695 Female, age 67, right hemisphere 1389.6
2514 Male, age 75, right hemisphere 1385.5
1987 Female, age 91, left hemisphere 1356.6
2814 Male, age 76, right hemisphere 1337.8
Basal amygdala
nTPM: 1328.1
2110 Male, age 80, left hemisphere 1351.4
2827 Female, age 67, right hemisphere 1340.7
2609 Male, age 75, right hemisphere 1337.1
2685 Female, age 94, left hemisphere 1328.0
1955 Male, age 76, both hemispheres 1308.3
2243 Female, age 91, right hemisphere 1303.0
Central amygdala
nTPM: 1349.1
2826 Female, age 94, left hemisphere 1406.6
2515 Male, age 75, right hemisphere 1392.7
1905 Male, age 76, both hemispheres 1337.1
2239 Male, age 80, left hemisphere 1320.2
2701 Female, age 91, right hemisphere 1288.9
Corticomedial amygdala
nTPM: 1336.2
2429 Female, age 94, left hemisphere 1394.1
2428 Male, age 75, right hemisphere 1360.9
2829 Male, age 80, left hemisphere 1342.6
2535 Female, age 67, right hemisphere 1320.0
2242 Female, age 91, right hemisphere 1304.3
2240 Male, age 76, both hemispheres 1295.1
Lateral amygdala
nTPM: 1359.2
2516 Male, age 75, right hemisphere 1451.0
2534 Female, age 94, left hemisphere 1399.4
2830 Female, age 67, right hemisphere 1372.0
2256 Male, age 80, left hemisphere 1323.9
1883 Male, age 76, both hemispheres 1308.6
2255 Female, age 91, right hemisphere 1300.3
Stria terminalis, bed nucleus
nTPM: 1325.1
1974 Female, age 91, both hemispheres 1371.4
2486 Female, age 94, both hemispheres 1319.2
2201 Male, age 74, unknown 1284.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2062.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2062.6
Samples: 152

Max nTPM: 8420.5
Min nTPM: 841.9
Std nTPM: 1097.1
Median nTPM: 1826.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 8420.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 7519.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 5475.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 5385.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 5269.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4576.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 4521.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 4049.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3728.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3691.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 3581.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3313.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 3271.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3258.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 3194.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3143.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2965.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2904.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2870.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2848.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2797.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2787.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2769.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2746.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2745.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2704.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2698.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2681.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2554.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2489.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2486.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2479.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2443.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2434.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2408.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2389.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2387.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2382.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2333.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2317.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2317.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2293.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2287.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2246.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2201.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2188.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2165.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2159.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 2141.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2127.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2121.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2097.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2097.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2094.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 2088.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2087.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2083.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2051.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2049.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2021.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2019.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 2014.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1983.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1932.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1910.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1909.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1900.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1897.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1877.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1873.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1864.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1861.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1858.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1837.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1834.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1832.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1820.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1818.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1808.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1801.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1767.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1758.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1756.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1728.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1722.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1714.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1691.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1676.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1659.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1645.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1641.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1639.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1614.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1570.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1568.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1556.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1555.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1546.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1536.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1525.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1516.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1515.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1500.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1485.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1485.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1484.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1474.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1471.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1470.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1454.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1446.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1440.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1439.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1437.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1429.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1427.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1376.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1361.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1359.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1337.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1303.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1292.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1279.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1277.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1272.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1271.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1265.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1258.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1245.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1236.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1210.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1195.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1188.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1186.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1157.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1143.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1125.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1123.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1111.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1091.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1082.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1070.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1067.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1053.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1047.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1001.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 973.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 956.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 949.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 934.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 909.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 841.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 283.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 283.6
FF:10151-102I7 76 years, female 283.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 125.6
Pig sample Sample description nTPM
Amygdala
nTPM: 125.6
Samples: 4

Max nTPM: 167.6
Min nTPM: 70.8
Sample A Female 167.6
Sample B Female 138.4
Sample C Male 125.5
Sample D Male 70.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1640.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 1640.9
Samples: 4

Max nTPM: 1825.1
Min nTPM: 1476.2
Sample A Male 1476.2
Sample B Male 1699.7
Sample C Female 1825.1
Sample D Female 1562.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.7
74425523 Antisense, RP_051214_02_E09, Mouse strain C57BL/6J (56 days, male) 7.8
68545854 Antisense, RP_050120_01_F03, Mouse strain C57BL/6J (56 days, male) 7.6

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