MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1347.8 nTPM
HPA:1347.8 nTPM
GTEx:1620.4 nTPM
FANTOM5:341.0 Scaled Tags Per Million
Pig:199.3 nTPM
Mouse:873.8 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1347.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1316.0
2411 Female, age 72, unknown 1344.9
1870 Female, age 42, unknown 1329.3
2219 Male, age 76, both hemispheres 1324.9
2019 Male, age 18, unknown 1321.4
2586 Male, age 75, left hemisphere 1317.4
2828 Female, age 72, unknown 1315.8
1827 Male, age 72, unknown 1311.4
1833 Male, age 53, unknown 1299.5
2666 Male, age 74, left hemisphere 1298.1
1830 Male, age 51, unknown 1297.6
Dorsal raphe nucleus
nTPM: 1320.9
2298 Female, age 72, unknown 1364.5
2750 Male, age 76, both hemispheres 1325.4
2016 Female, age 72, unknown 1317.7
1828 Male, age 53, unknown 1302.3
2047 Male, age 72, unknown 1294.9
Inferior colliculus
nTPM: 1314.0
2097 Female, age 72, unknown 1342.0
1890 Male, age 53, unknown 1330.5
1848 Female, age 42, unknown 1301.4
2849 Male, age 72, unknown 1282.1
Median raphe nucleus
nTPM: 1306.9
2220 Male, age 76, midline 1306.9
Pedunculopontine tegmental nucleus
nTPM: 1334.8
2334 Male, age 80, both hemispheres 1339.6
2338 Male, age 61, both hemispheres 1338.7
1921 Female, age 85, both hemispheres 1326.0
Periaquaductal grey, anterior
nTPM: 1344.8
2502 Female, age 75, unknown 1379.3
1795 Male, age 51, unknown 1333.0
1947 Male, age 18, unknown 1322.1
Periaquaductal grey, dorsal
nTPM: 1308.4
1840 Male, age 53, unknown 1322.7
2464 Female, age 72, unknown 1321.7
1831 Male, age 72, unknown 1307.2
2850 Male, age 76, both hemispheres 1282.2
Periaquaductal grey, lateral
nTPM: 1297.6
2053 Male, age 18, unknown 1311.1
2140 Male, age 76, both hemispheres 1296.9
2272 Male, age 74, both hemispheres 1284.9
Pretectal area
nTPM: 1317.3
1816 Male, age 51, unknown 1338.0
2007 Male, age 72, unknown 1336.9
2224 Female, age 72, unknown 1334.8
2316 Male, age 76, right hemisphere 1328.0
1817 Female, age 42, unknown 1325.4
1815 Male, age 53, unknown 1317.5
2667 Female, age 75, unknown 1312.7
1944 Female, age 72, unknown 1312.1
2825 Male, age 18, unknown 1304.4
2273 Male, age 74, both hemispheres 1297.3
2407 Male, age 75, both hemispheres 1282.7
Red nucleus
nTPM: 1332.2
2503 Female, age 72, unknown 1373.8
1821 Female, age 72, unknown 1353.2
2227 Male, age 72, unknown 1345.6
1904 Male, age 53, unknown 1345.1
2769 Male, age 72, unknown 1337.8
1865 Male, age 51, unknown 1336.4
2785 Male, age 18, unknown 1329.8
2725 Female, age 75, unknown 1326.8
2588 Male, age 74, left hemisphere 1319.1
1954 Female, age 42, unknown 1313.5
2584 Male, age 75, left hemisphere 1306.9
2823 Male, age 76, right hemisphere 1297.7
Substantia nigra
nTPM: 1347.8
2409 Female, age 72, unknown 1447.3
1851 Male, age 51, unknown 1403.2
2241 Male, age 72, unknown 1359.6
1916 Female, age 42, unknown 1350.7
2699 Male, age 18, unknown 1340.9
2665 Male, age 74, both hemispheres 1338.3
1889 Female, age 72, unknown 1325.4
2590 Female, age 75, unknown 1311.7
1941 Male, age 53, unknown 1307.1
2583 Male, age 75, right hemisphere 1293.8
Superior colliculus
nTPM: 1323.9
1796 Male, age 53, unknown 1350.2
1913 Female, age 42, unknown 1341.3
1995 Male, age 72, unknown 1337.2
2261 Male, age 18, unknown 1333.4
2668 Female, age 75, unknown 1331.2
2087 Female, age 72, unknown 1324.9
2587 Male, age 74, left hemisphere 1321.5
1895 Male, age 76, right hemisphere 1313.6
1839 Male, age 51, unknown 1299.3
2664 Male, age 75, both hemispheres 1286.1
Ventral tegmental area
nTPM: 1334.8
1915 Female, age 42, unknown 1368.8
2223 Female, age 72, unknown 1349.5
2410 Female, age 72, unknown 1344.9
2021 Male, age 53, unknown 1327.5
1942 Male, age 51, unknown 1316.6
2218 Male, age 76, both hemispheres 1301.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1620.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1620.4
Samples: 139

Max nTPM: 5563.7
Min nTPM: 575.1
Std nTPM: 755.7
Median nTPM: 1436.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5563.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5094.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 4178.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3897.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3139.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3075.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 2986.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2898.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 2757.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2725.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2684.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 341.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 341.0
FF:10158-103A5 76 years, female 341.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 199.3
Pig sample Sample description nTPM
Midbrain
nTPM: 195.2
Samples: 4

Max nTPM: 300.8
Min nTPM: 116.5
Sample A Female 300.8
Sample B Female 213.9
Sample C Male 149.5
Sample D Male 116.5
Periaqueductal gray
nTPM: 143.9
Samples: 3

Max nTPM: 156.6
Min nTPM: 123.3
Sample B Female 156.6
Sample C Male 151.7
Sample D Male 123.3
Substantia nigra
nTPM: 199.3
Samples: 4

Max nTPM: 291.9
Min nTPM: 148.3
Sample A Female 291.9
Sample B Female 201.7
Sample C Male 155.3
Sample D Male 148.3
Superior colliculi
nTPM: 193.6
Samples: 4

Max nTPM: 259.1
Min nTPM: 150.1
Sample A Female 259.1
Sample B Female 201.2
Sample C Male 164.0
Sample D Male 150.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 873.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 873.8
Samples: 4

Max nTPM: 1128.8
Min nTPM: 679.2
Sample A Male 1128.8
Sample B Male 806.9
Sample C Female 679.2
Sample D Female 880.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
74425523 Antisense, RP_051214_02_E09, Mouse strain C57BL/6J (56 days, male) 7.1
68545854 Antisense, RP_050120_01_F03, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.