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RPS21
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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1420.6 nTPM
HPA:1420.6 nTPM
FANTOM5:269.8 Scaled Tags Per Million
Pig:191.2 nTPM
Mouse:1103.6 nTPM
Allen mouse:5.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 1420.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 1321.3
2396 Male, age 61, right hemisphere 1336.0
2497 Male, age 66, unknown 1317.0
2032 Female, age 42, unknown 1310.7
Centromedial thalamic nucleus
nTPM: 1289.1
2401 Male, age 76, right hemisphere 1298.5
2279 Female, age 85, left hemisphere 1279.8
Habenula
nTPM: 1323.7
1957 Male, age 80, both hemispheres 1340.0
2203 Male, age 61, left hemisphere 1335.2
2252 Male, age 62, unknown 1324.6
2276 Male, age 66, unknown 1295.0
Lateral geniculate body
nTPM: 1326.5
2857 Male, age 74, right hemisphere 1389.5
2575 Female, age 94, right hemisphere 1347.2
2106 Female, age 67, right hemisphere 1339.7
1953 Male, age 62, unknown 1320.2
2841 Male, age 80, both hemispheres 1316.4
2035 Female, age 72, unknown 1305.1
2399 Male, age 61, left hemisphere 1303.5
2659 Male, age 66, unknown 1290.3
Lateral thalamic nuclei
nTPM: 1340.0
2765 Female, age 67, both hemispheres 1389.7
2661 Female, age 72, unknown 1354.0
2573 Female, age 94, left hemisphere 1341.6
2577 Male, age 74, both hemispheres 1316.1
1903 Male, age 76, left hemisphere 1298.9
Medial dorsal thalamic nucleus
nTPM: 1330.2
2572 Female, age 94, right hemisphere 1399.7
1971 Male, age 61, right hemisphere 1371.2
1810 Male, age 48, unknown 1342.5
2576 Male, age 74, both hemispheres 1334.3
2498 Male, age 66, unknown 1332.7
1930 Female, age 42, unknown 1331.7
2402 Female, age 67, both hemispheres 1329.2
2283 Male, age 80, right hemisphere 1314.0
1859 Male, age 76, both hemispheres 1313.9
2026 Male, age 62, unknown 1312.5
2492 Male, age 75, right hemisphere 1309.4
2660 Female, age 72, unknown 1303.7
2039 Female, age 72, unknown 1298.0
Medial geniculate body
nTPM: 1322.9
2650 Female, age 94, left hemisphere 1359.7
2657 Male, age 74, right hemisphere 1331.2
2571 Male, age 75, right hemisphere 1328.3
1811 Female, age 42, unknown 1323.8
2207 Male, age 80, right hemisphere 1315.1
2217 Female, age 72, unknown 1301.6
2049 Male, age 76, both hemispheres 1300.7
Nucleus reuniens
nTPM: 1331.8
2212 Female, age 67, left hemisphere 1348.4
2205 Male, age 80, left hemisphere 1324.5
2210 Female, age 85, left hemisphere 1322.4
Nucleus rhomboideus
nTPM: 1317.4
2213 Female, age 67, left hemisphere 1346.6
2206 Male, age 80, both hemispheres 1312.5
2280 Female, age 85, left hemisphere 1293.2
Posterior thalamic nucleus
nTPM: 1420.6
2649 Female, age 94, both hemispheres 1568.7
2655 Male, age 74, right hemisphere 1394.9
2495 Female, age 67, right hemisphere 1367.0
2266 Male, age 76, right hemisphere 1351.8
Pulvinar
nTPM: 1330.3
2496 Female, age 67, right hemisphere 1390.1
2499 Male, age 66, unknown 1358.1
1932 Male, age 80, right hemisphere 1341.2
1929 Male, age 48, unknown 1335.6
1972 Male, age 62, unknown 1328.9
2724 Male, age 74, right hemisphere 1326.1
2582 Female, age 72, unknown 1313.4
2214 Male, age 76, right hemisphere 1311.3
1899 Female, age 42, unknown 1305.6
2398 Male, age 61, left hemisphere 1292.5
Subthalamic nucleus
nTPM: 1320.3
2056 Female, age 72, unknown 1363.4
2124 Male, age 62, unknown 1333.7
2275 Male, age 66, unknown 1333.3
2282 Male, age 61, both hemispheres 1323.4
2658 Male, age 74, both hemispheres 1314.0
2779 Female, age 42, unknown 1305.2
2216 Male, age 48, unknown 1304.1
2406 Female, age 72, unknown 1285.0
Ventral posterolateral thalamic nucleus
nTPM: 1315.2
2197 Male, age 80, both hemispheres 1351.8
2740 Male, age 76, right hemisphere 1331.1
2578 Male, age 74, both hemispheres 1321.9
2397 Male, age 61, right hemisphere 1311.3
2570 Male, age 75, right hemisphere 1298.6
2581 Female, age 72, unknown 1276.3
Ventral posteromedial thalamic nucleus
nTPM: 1327.3
2653 Male, age 74, both hemispheres 1342.7
2281 Male, age 75, right hemisphere 1332.3
2758 Male, age 80, both hemispheres 1329.1
2202 Male, age 61, left hemisphere 1324.5
2127 Male, age 76, right hemisphere 1307.9
Ventral thalamic nuclei
nTPM: 1320.8
2291 Female, age 72, unknown 1351.3
2285 Male, age 62, unknown 1343.1
1912 Female, age 42, unknown 1328.5
1860 Male, age 76, both hemispheres 1320.2
2580 Male, age 66, unknown 1318.3
1845 Male, age 48, unknown 1314.7
2652 Male, age 74, left hemisphere 1306.9
2858 Female, age 72, unknown 1302.6
2204 Male, age 80, both hemispheres 1301.9
Ventromedial nucleus
nTPM: 1333.6
1982 Female, age 72, unknown 1357.9
1822 Female, age 42, unknown 1309.3
Zona incerta
nTPM: 1310.5
2215 Male, age 66, unknown 1358.6
2822 Male, age 74, right hemisphere 1331.1
2208 Male, age 80, right hemisphere 1302.5
2403 Male, age 62, unknown 1287.7
2663 Female, age 72, unknown 1272.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 269.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 269.8
FF:10154-103A1 76 years, female 269.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 191.2
Pig sample Sample description nTPM
Thalamus
nTPM: 191.2
Samples: 4

Max nTPM: 230.5
Min nTPM: 137.0
Sample A Female 230.5
Sample B Female 137.0
Sample C Male 212.8
Sample D Male 184.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1103.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 1103.6
Samples: 4

Max nTPM: 1481.7
Min nTPM: 812.0
Sample A Male 1481.7
Sample B Male 939.0
Sample C Female 1181.5
Sample D Female 812.0

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 5.7
74425523 Antisense, RP_051214_02_E09, Mouse strain C57BL/6J (56 days, male) 7.2
68545854 Antisense, RP_050120_01_F03, Mouse strain C57BL/6J (56 days, male) 4.3

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