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RPL38
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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1528.1 nTPM
HPA:1528.1 nTPM
FANTOM5:1058.2 Scaled Tags Per Million
Pig:367.1 nTPM
Mouse:1184.8 nTPM

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 1528.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1502.7
2188 Female, age 91, both hemispheres 1596.2
2090 Male, age 80, both hemispheres 1506.2
2301 Female, age 85, both hemispheres 1490.2
1984 Male, age 76, both hemispheres 1418.3
Area postrema
nTPM: 1458.9
2306 Male, age 80, both hemispheres 1493.3
2799 Male, age 61, both hemispheres 1490.3
2054 Male, age 76, both hemispheres 1393.3
Cuneate nuclei
nTPM: 1443.5
2381 Male, age 80, both hemispheres 1483.4
2376 Male, age 61, both hemispheres 1451.4
2131 Male, age 76, both hemispheres 1395.9
Dorsal cochlear nucleus
nTPM: 1457.4
2187 Female, age 91, both hemispheres 1535.1
2802 Male, age 74, right hemisphere 1474.1
2370 Male, age 61, both hemispheres 1452.5
2378 Male, age 80, both hemispheres 1428.6
2058 Male, age 76, both hemispheres 1396.9
Dorsal medullary reticular nucleus
nTPM: 1445.2
2373 Male, age 61, both hemispheres 1478.1
2040 Female, age 85, both hemispheres 1452.5
2088 Male, age 76, both hemispheres 1405.0
Dorsal motor vagal complex
nTPM: 1466.6
2797 Male, age 61, both hemispheres 1586.0
2643 Male, age 74, both hemispheres 1495.1
2807 Female, age 85, both hemispheres 1470.1
2813 Female, age 72, unknown 1445.4
2133 Female, age 91, both hemispheres 1443.6
2000 Male, age 74, unknown 1434.9
2844 Male, age 55, unknown 1428.8
2185 Male, age 76, both hemispheres 1428.5
Dorsal tegmental nucleus
nTPM: 1489.0
2083 Male, age 80, both hemispheres 1509.4
2326 Male, age 74, both hemispheres 1496.6
2358 Male, age 61, both hemispheres 1480.0
1936 Male, age 76, left hemisphere 1470.0
Dorsolateral tegmental area
nTPM: 1491.8
2337 Male, age 61, both hemispheres 1545.0
2654 Male, age 80, both hemispheres 1516.8
2751 Female, age 85, both hemispheres 1505.4
2141 Male, age 76, both hemispheres 1446.1
2360 Male, age 74, both hemispheres 1445.7
Gigantocellular reticular nuclei, medullary
nTPM: 1469.4
2314 Male, age 61, both hemispheres 1555.0
1876 Female, age 85, both hemispheres 1488.9
2387 Female, age 91, both hemispheres 1471.7
2310 Male, age 80, both hemispheres 1457.2
2022 Male, age 76, right hemisphere 1432.4
2462 Male, age 74, both hemispheres 1411.0
Gigantocellular reticular nuclei, pars
nTPM: 1468.0
2168 Male, age 76, both hemispheres 1489.9
2336 Male, age 61, both hemispheres 1467.4
2084 Female, age 85, both hemispheres 1466.3
2706 Male, age 80, both hemispheres 1462.8
2330 Male, age 80, both hemispheres 1453.7
Inferior olive
nTPM: 1496.7
2628 Female, age 91, both hemispheres 1529.6
2178 Male, age 61, both hemispheres 1520.1
2563 Male, age 74, both hemispheres 1506.8
2085 Female, age 85, both hemispheres 1478.6
2379 Male, age 80, both hemispheres 1448.5
Kolliker-Fuse nucleus
nTPM: 1509.5
2793 Female, age 91, left hemisphere 1578.8
2163 Male, age 80, both hemispheres 1482.3
2315 Male, age 76, right hemisphere 1467.3
Lateral lemniscal nuclei
nTPM: 1458.7
2320 Female, age 91, left hemisphere 1491.2
2169 Male, age 76, both hemispheres 1480.9
2453 Male, age 74, right hemisphere 1461.8
2746 Female, age 85, left hemisphere 1434.8
2036 Male, age 80, both hemispheres 1424.9
Lateral medullary reticular nucleus
nTPM: 1498.6
2374 Male, age 61, both hemispheres 1532.3
2852 Male, age 80, both hemispheres 1519.9
2190 Female, age 85, both hemispheres 1509.5
2804 Female, age 91, both hemispheres 1502.2
2305 Male, age 74, both hemispheres 1482.9
2044 Male, age 76, both hemispheres 1444.6
Lateral parabrachial nucleus
nTPM: 1485.6
2792 Male, age 76, both hemispheres 1555.7
2139 Female, age 85, right hemisphere 1473.4
2013 Male, age 80, both hemispheres 1468.0
2790 Male, age 61, both hemispheres 1445.3
Lateral vestibular nucleus
nTPM: 1464.5
2311 Male, age 80, both hemispheres 1491.1
2184 Male, age 76, both hemispheres 1437.9
Locus coeruleus
nTPM: 1433.8
2720 Male, age 74, both hemispheres 1512.1
2162 Male, age 80, both hemispheres 1464.4
2123 Female, age 91, both hemispheres 1434.1
2788 Male, age 74, unknown 1426.0
2014 Male, age 55, unknown 1412.9
2317 Female, age 72, unknown 1400.4
1980 Male, age 76, both hemispheres 1387.1
Medial olivary nucleus
nTPM: 1528.1
1943 Male, age 61, both hemispheres 1554.7
2851 Male, age 80, both hemispheres 1548.2
1962 Male, age 76, both hemispheres 1522.1
2138 Female, age 91, both hemispheres 1487.5
Medial parabrachial nucleus
nTPM: 1509.6
2170 Female, age 91, both hemispheres 1600.3
2854 Male, age 80, both hemispheres 1562.2
2786 Male, age 76, both hemispheres 1471.8
2156 Male, age 61, both hemispheres 1467.7
2463 Female, age 85, right hemisphere 1445.8
Medial periolivary nuclei
nTPM: 1457.7
2458 Female, age 91, both hemispheres 1500.1
2063 Male, age 76, both hemispheres 1464.3
2171 Female, age 85, both hemispheres 1447.6
2081 Male, age 80, both hemispheres 1443.9
2791 Male, age 74, right hemisphere 1432.9
Medial vestibular nucleus
nTPM: 1484.8
2803 Female, age 91, both hemispheres 1558.5
2624 Male, age 61, both hemispheres 1539.0
2801 Male, age 74, both hemispheres 1502.6
2093 Male, age 80, both hemispheres 1463.1
2743 Female, age 85, both hemispheres 1436.7
2134 Male, age 76, both hemispheres 1408.9
Motor facial nucleus
nTPM: 1465.6
2697 Female, age 85, both hemispheres 1531.5
2365 Male, age 74, right hemisphere 1464.4
2795 Female, age 91, both hemispheres 1459.7
2062 Male, age 76, both hemispheres 1454.8
2126 Male, age 61, both hemispheres 1448.4
2327 Male, age 80, both hemispheres 1434.8
Motor hypoglossal nucleus
nTPM: 1463.6
2132 Female, age 85, both hemispheres 1522.5
2182 Male, age 80, both hemispheres 1504.0
2125 Female, age 91, both hemispheres 1492.7
2461 Male, age 61, both hemispheres 1429.6
2277 Male, age 76, both hemispheres 1369.2
Motor trigeminal nucleus
nTPM: 1470.8
2321 Female, age 91, both hemispheres 1502.1
2335 Male, age 61, both hemispheres 1477.8
2560 Male, age 74, both hemispheres 1464.5
2079 Male, age 80, both hemispheres 1455.1
2309 Male, age 76, both hemispheres 1454.3
Nuclei of the trapezoid body
nTPM: 1462.1
1983 Male, age 76, both hemispheres 1537.8
2166 Male, age 80, both hemispheres 1476.4
2159 Male, age 61, both hemispheres 1438.3
2368 Female, age 91, both hemispheres 1438.3
2735 Female, age 85, both hemispheres 1419.7
Nucleus ambiguus
nTPM: 1415.3
2071 Male, age 76, both hemispheres 1456.9
2096 Female, age 85, both hemispheres 1373.8
Nucleus cuneatus
nTPM: 1468.5
2808 Female, age 85, both hemispheres 1539.2
2805 Female, age 91, both hemispheres 1484.0
2380 Male, age 80, both hemispheres 1467.0
2562 Male, age 61, both hemispheres 1463.4
2564 Male, age 74, both hemispheres 1448.9
2100 Male, age 76, both hemispheres 1408.5
Nucleus gracilis
nTPM: 1498.0
2382 Male, age 80, both hemispheres 1514.8
2627 Male, age 74, both hemispheres 1512.8
2299 Female, age 85, both hemispheres 1466.4
Nucleus raphe magnus
nTPM: 1457.6
2455 Male, age 74, both hemispheres 1473.3
2328 Male, age 80, both hemispheres 1466.9
2051 Male, age 76, both hemispheres 1460.6
2172 Female, age 85, both hemispheres 1458.2
2459 Female, age 91, both hemispheres 1456.3
2160 Male, age 61, both hemispheres 1430.3
Nucleus raphe obscurus
nTPM: 1521.8
2845 Female, age 85, midline 1561.9
2800 Male, age 61, midline 1528.8
2142 Male, age 76, midline 1474.7
Nucleus raphe pallidus
nTPM: 1496.4
1924 Male, age 61, midline 1523.5
2183 Male, age 80, midline 1505.1
2145 Male, age 76, midline 1460.7
Nucleus tractus solitarii
nTPM: 1411.0
2191 Female, age 85, both hemispheres 1464.5
2307 Male, age 80, both hemispheres 1397.5
2656 Male, age 76, both hemispheres 1394.4
2144 Female, age 91, right hemisphere 1387.6
Paramedian reticular nucleus
nTPM: 1467.3
2052 Male, age 76, both hemispheres 1519.8
2050 Female, age 85, both hemispheres 1466.5
2313 Male, age 61, both hemispheres 1447.4
2057 Male, age 80, both hemispheres 1435.3
Parvicellular reticular nuclei
nTPM: 1474.0
2095 Male, age 76, both hemispheres 1503.9
2119 Male, age 80, both hemispheres 1474.3
2558 Male, age 74, both hemispheres 1443.7
Parvicellular reticular nuclei, medullary
nTPM: 1467.9
2189 Female, age 91, both hemispheres 1492.5
2181 Male, age 80, left hemisphere 1460.6
2091 Female, age 85, both hemispheres 1450.4
Peritrigeminal nucleus
nTPM: 1477.9
2067 Female, age 85, both hemispheres 1491.4
2136 Male, age 76, both hemispheres 1486.8
2179 Male, age 61, both hemispheres 1455.5
Pontine nuclei
nTPM: 1476.9
2319 Female, age 91, both hemispheres 1535.5
2454 Male, age 74, left hemisphere 1511.6
1863 Male, age 55, unknown 1493.9
2787 Female, age 85, both hemispheres 1485.1
1968 Male, age 76, left hemisphere 1478.2
2115 Male, age 80, left hemisphere 1460.6
2109 Female, age 72, unknown 1447.5
2727 Male, age 61, right hemisphere 1402.9
Pontine raphe nucleus
nTPM: 1452.7
2122 Female, age 85, midline 1466.4
2853 Male, age 76, midline 1439.0
Posteroventral cochlear nucleus
nTPM: 1511.0
2135 Female, age 91, both hemispheres 1609.2
2341 Male, age 80, both hemispheres 1589.3
2371 Male, age 61, both hemispheres 1475.0
2752 Female, age 85, both hemispheres 1449.9
2070 Male, age 76, both hemispheres 1431.8
Prepositus hypoglossal nucleus
nTPM: 1474.0
2855 Female, age 85, right hemisphere 1515.0
2086 Male, age 80, both hemispheres 1432.9
Principal sensory trigeminal nucleus
nTPM: 1451.4
2367 Female, age 91, left hemisphere 1499.9
2158 Male, age 61, both hemispheres 1452.1
2324 Male, age 76, both hemispheres 1439.2
2008 Male, age 80, left hemisphere 1414.3
Reticular pontine nucleus, caudal
nTPM: 1494.4
2559 Male, age 74, both hemispheres 1526.0
2457 Female, age 91, both hemispheres 1517.7
2092 Male, age 76, both hemispheres 1514.7
2332 Male, age 80, right hemisphere 1419.3
Reticular pontine nucleus, oral
nTPM: 1501.0
2366 Female, age 91, both hemispheres 1594.3
1939 Male, age 80, both hemispheres 1501.2
2167 Male, age 76, both hemispheres 1482.6
2361 Male, age 74, both hemispheres 1470.9
2012 Female, age 85, both hemispheres 1455.9
Reticulotegmental nucleus
nTPM: 1465.4
2452 Male, age 74, both hemispheres 1489.1
2322 Female, age 91, both hemispheres 1465.5
2333 Male, age 80, both hemispheres 1460.4
2325 Male, age 76, both hemispheres 1446.8
Spinal trigeminal nucleus, caudal
nTPM: 1462.0
2312 Male, age 61, both hemispheres 1491.8
2390 Female, age 91, both hemispheres 1480.9
2308 Male, age 80, both hemispheres 1470.0
2642 Male, age 74, both hemispheres 1464.9
2447 Male, age 76, both hemispheres 1402.1
Spinal trigeminal nucleus, interpolar
nTPM: 1467.0
2389 Female, age 91, both hemispheres 1493.9
2625 Male, age 61, both hemispheres 1476.8
2033 Male, age 80, both hemispheres 1475.5
2066 Male, age 76, right hemisphere 1455.6
2386 Female, age 85, both hemispheres 1433.0
Spinal trigeminal nucleus, oral
nTPM: 1446.7
2164 Male, age 80, both hemispheres 1464.4
1978 Male, age 76, both hemispheres 1452.8
2737 Female, age 85, both hemispheres 1422.9
Spinal vestibular nucleus
nTPM: 1514.4
2806 Female, age 85, both hemispheres 1551.4
2796 Male, age 61, both hemispheres 1550.3
2384 Male, age 74, both hemispheres 1516.3
2748 Male, age 76, both hemispheres 1492.9
2186 Female, age 91, both hemispheres 1492.1
2780 Male, age 80, both hemispheres 1483.3
Subcoeruleus area
nTPM: 1480.5
2369 Female, age 85, left hemisphere 1509.1
2451 Male, age 74, both hemispheres 1503.6
1958 Male, age 80, both hemispheres 1491.3
2089 Male, age 76, left hemisphere 1455.2
2323 Female, age 91, left hemisphere 1443.6
Superior olive
nTPM: 1462.9
2020 Male, age 76, both hemispheres 1513.4
2561 Female, age 91, both hemispheres 1473.0
1875 Female, age 85, both hemispheres 1446.8
2364 Male, age 74, right hemisphere 1440.9
2329 Male, age 80, right hemisphere 1440.3
Superior vestibular nucleus
nTPM: 1464.9
2383 Male, age 74, both hemispheres 1486.5
2015 Male, age 80, both hemispheres 1473.6
2061 Male, age 76, both hemispheres 1434.6
Ventral medullary reticular nucleus
nTPM: 1461.3
2372 Male, age 61, both hemispheres 1492.8
2060 Male, age 76, both hemispheres 1429.8
Ventral periolivary nuclei
nTPM: 1472.5
2794 Female, age 91, left hemisphere 1494.6
2023 Male, age 76, both hemispheres 1490.1
2165 Male, age 80, both hemispheres 1481.9
2130 Female, age 85, both hemispheres 1423.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 1479.2
2118 Male, age 80, both hemispheres 1503.2
2180 Male, age 61, both hemispheres 1498.8
2302 Female, age 91, both hemispheres 1483.5
1986 Male, age 76, both hemispheres 1463.2
2741 Female, age 85, both hemispheres 1447.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1462.9
1959 Male, age 76, both hemispheres 1494.6
2840 Female, age 85, both hemispheres 1493.5
2161 Male, age 80, both hemispheres 1468.6
2456 Female, age 91, both hemispheres 1450.6
2359 Male, age 61, both hemispheres 1443.2
2449 Male, age 74, both hemispheres 1427.1

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1058.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1058.2
FF:10182-103D2 60 years, female 1194.1
FF:10165-103B3 76 years, female 922.4
Medulla oblongata
Scaled Tags Per Million: 815.8
FF:10174-103C3 60 years, female 1381.0
FF:10155-103A2 76 years, female 737.2
FF:10038-101F2 18-64 years, mixed 329.3
Pons
Scaled Tags Per Million: 308.2
FF:10033-101E6 18-54 years, mixed 308.2

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 367.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 340.9
Samples: 4

Max nTPM: 387.3
Min nTPM: 269.8
Sample A Female 324.7
Sample B Female 269.8
Sample C Male 381.7
Sample D Male 387.3
Pons
nTPM: 367.2
Samples: 4

Max nTPM: 451.7
Min nTPM: 246.7
Sample A Female 391.8
Sample B Female 246.7
Sample C Male 451.7
Sample D Male 378.4

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1184.8
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 1184.8
Samples: 4

Max nTPM: 1279.9
Min nTPM: 1064.7
Sample A Male 1279.9
Sample B Male 1064.7
Sample C Female 1248.2
Sample D Female 1146.3

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