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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:363.5 nTPM
HPA:363.5 nTPM
GTEx:340.7 nTPM
FANTOM5:270.7 Scaled Tags Per Million
Pig:178.4 nTPM
Mouse:151.7 nTPM
Allen mouse:9.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 363.5
Sample id Sample description nTPM
Amygdala
nTPM: 363.5
2814 Male, age 76, right hemisphere 430.9
2695 Female, age 67, right hemisphere 385.4
2514 Male, age 75, right hemisphere 352.0
2517 Female, age 94, left hemisphere 334.1
1987 Female, age 91, left hemisphere 315.2
Basal amygdala
nTPM: 315.8
2609 Male, age 75, right hemisphere 363.5
1955 Male, age 76, both hemispheres 332.2
2685 Female, age 94, left hemisphere 317.5
2827 Female, age 67, right hemisphere 307.7
2110 Male, age 80, left hemisphere 301.9
2243 Female, age 91, right hemisphere 272.2
Central amygdala
nTPM: 334.9
1905 Male, age 76, both hemispheres 367.9
2826 Female, age 94, left hemisphere 355.0
2515 Male, age 75, right hemisphere 322.0
2239 Male, age 80, left hemisphere 320.9
2701 Female, age 91, right hemisphere 309.0
Corticomedial amygdala
nTPM: 291.1
2428 Male, age 75, right hemisphere 322.4
2829 Male, age 80, left hemisphere 299.1
2429 Female, age 94, left hemisphere 294.7
2240 Male, age 76, both hemispheres 288.1
2535 Female, age 67, right hemisphere 279.6
2242 Female, age 91, right hemisphere 263.0
Lateral amygdala
nTPM: 341.7
1883 Male, age 76, both hemispheres 386.0
2516 Male, age 75, right hemisphere 369.6
2256 Male, age 80, left hemisphere 338.9
2830 Female, age 67, right hemisphere 329.9
2534 Female, age 94, left hemisphere 321.9
2255 Female, age 91, right hemisphere 303.8
Stria terminalis, bed nucleus
nTPM: 284.6
2201 Male, age 74, unknown 305.5
1974 Female, age 91, both hemispheres 282.8
2486 Female, age 94, both hemispheres 265.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 340.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 340.7
Samples: 152

Max nTPM: 954.4
Min nTPM: 86.6
Std nTPM: 113.6
Median nTPM: 324.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 954.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 673.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 605.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 576.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 571.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 564.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 560.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 553.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 509.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 504.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 503.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 502.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 501.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 486.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 485.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 481.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 475.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 467.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 465.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 463.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 461.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 458.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 452.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 443.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 438.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 437.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 437.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 433.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 430.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 421.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 418.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 418.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 417.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 417.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 407.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 405.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 404.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 401.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 401.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 398.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 397.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 395.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 395.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 393.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 391.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 389.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 389.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 387.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 384.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 381.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 379.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 378.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 374.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 372.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 366.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 365.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 360.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 359.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 358.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 356.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 353.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 353.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 348.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 347.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 344.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 344.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 344.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 340.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 340.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 337.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 335.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 334.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 333.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 328.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 326.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 324.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 323.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 320.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 319.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 318.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 316.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 312.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 311.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 311.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 305.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 304.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 301.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 300.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 298.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 295.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 294.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 294.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 293.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 292.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 292.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 291.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 286.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 286.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 284.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 283.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 283.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 281.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 277.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 276.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 274.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 273.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 272.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 270.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 268.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 265.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 264.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 264.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 260.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 258.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 256.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 256.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 255.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 254.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 252.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 246.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 246.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 245.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 244.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 242.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 240.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 240.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 237.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 235.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 233.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 232.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 228.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 227.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 224.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 224.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 221.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 219.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 219.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 216.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 209.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 208.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 208.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 205.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 203.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 202.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 201.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 201.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 199.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 193.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 187.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 165.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 157.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 86.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 270.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 270.7
FF:10151-102I7 76 years, female 270.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 178.4
Pig sample Sample description nTPM
Amygdala
nTPM: 178.4
Samples: 4

Max nTPM: 217.1
Min nTPM: 119.8
Sample A Female 217.1
Sample B Female 195.9
Sample C Male 180.6
Sample D Male 119.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 151.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 151.7
Samples: 4

Max nTPM: 172.6
Min nTPM: 129.4
Sample A Male 172.6
Sample B Male 141.1
Sample C Female 129.4
Sample D Female 163.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.1
670 Antisense, RP_Baylor_102908, Mouse strain C57BL/6J (56 days, male) 9.1
671 Antisense, RP_Baylor_102908, Mouse strain C57BL/6J (56 days, male) 8.1

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