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MARCKSL1
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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:466.4 nTPM
HPA:466.4 nTPM
FANTOM5:534.6 Scaled Tags Per Million
Pig:614.2 nTPM
Mouse:81.1 nTPM
Allen mouse:3.4 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 466.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 350.7
2032 Female, age 42, unknown 367.7
2497 Male, age 66, unknown 349.5
2396 Male, age 61, right hemisphere 334.7
Centromedial thalamic nucleus
nTPM: 463.3
2279 Female, age 85, left hemisphere 494.6
2401 Male, age 76, right hemisphere 432.0
Habenula
nTPM: 316.9
2203 Male, age 61, left hemisphere 334.6
2276 Male, age 66, unknown 319.4
1957 Male, age 80, both hemispheres 307.0
2252 Male, age 62, unknown 306.5
Lateral geniculate body
nTPM: 439.9
2575 Female, age 94, right hemisphere 538.5
2841 Male, age 80, both hemispheres 538.0
2659 Male, age 66, unknown 436.9
2035 Female, age 72, unknown 430.0
2857 Male, age 74, right hemisphere 418.3
2399 Male, age 61, left hemisphere 404.4
1953 Male, age 62, unknown 391.6
2106 Female, age 67, right hemisphere 361.8
Lateral thalamic nuclei
nTPM: 411.3
2573 Female, age 94, left hemisphere 496.5
2765 Female, age 67, both hemispheres 467.1
2661 Female, age 72, unknown 424.7
2577 Male, age 74, both hemispheres 348.5
1903 Male, age 76, left hemisphere 319.9
Medial dorsal thalamic nucleus
nTPM: 353.3
2660 Female, age 72, unknown 463.3
2572 Female, age 94, right hemisphere 441.5
1859 Male, age 76, both hemispheres 381.8
2576 Male, age 74, both hemispheres 373.5
2492 Male, age 75, right hemisphere 352.8
1930 Female, age 42, unknown 330.2
2283 Male, age 80, right hemisphere 330.1
2026 Male, age 62, unknown 327.0
2402 Female, age 67, both hemispheres 325.1
2039 Female, age 72, unknown 322.5
2498 Male, age 66, unknown 322.1
1810 Male, age 48, unknown 321.3
1971 Male, age 61, right hemisphere 301.4
Medial geniculate body
nTPM: 379.2
2650 Female, age 94, left hemisphere 424.7
2571 Male, age 75, right hemisphere 412.9
2657 Male, age 74, right hemisphere 399.5
2217 Female, age 72, unknown 397.2
2207 Male, age 80, right hemisphere 390.0
2049 Male, age 76, both hemispheres 339.9
1811 Female, age 42, unknown 290.5
Nucleus reuniens
nTPM: 436.1
2210 Female, age 85, left hemisphere 562.8
2205 Male, age 80, left hemisphere 447.7
2212 Female, age 67, left hemisphere 297.7
Nucleus rhomboideus
nTPM: 374.1
2280 Female, age 85, left hemisphere 531.9
2206 Male, age 80, both hemispheres 327.1
2213 Female, age 67, left hemisphere 263.3
Posterior thalamic nucleus
nTPM: 374.4
2649 Female, age 94, both hemispheres 427.1
2266 Male, age 76, right hemisphere 391.5
2655 Male, age 74, right hemisphere 363.8
2495 Female, age 67, right hemisphere 315.0
Pulvinar
nTPM: 384.3
2724 Male, age 74, right hemisphere 444.9
1932 Male, age 80, right hemisphere 425.0
2398 Male, age 61, left hemisphere 421.6
2582 Female, age 72, unknown 401.8
1972 Male, age 62, unknown 396.0
2214 Male, age 76, right hemisphere 379.9
1929 Male, age 48, unknown 360.2
1899 Female, age 42, unknown 359.7
2499 Male, age 66, unknown 344.3
2496 Female, age 67, right hemisphere 309.3
Subthalamic nucleus
nTPM: 466.4
2124 Male, age 62, unknown 563.6
2216 Male, age 48, unknown 543.5
2282 Male, age 61, both hemispheres 537.5
2056 Female, age 72, unknown 513.5
2275 Male, age 66, unknown 445.5
2779 Female, age 42, unknown 420.2
2658 Male, age 74, both hemispheres 406.0
2406 Female, age 72, unknown 301.5
Ventral posterolateral thalamic nucleus
nTPM: 419.4
2740 Male, age 76, right hemisphere 501.8
2570 Male, age 75, right hemisphere 498.4
2581 Female, age 72, unknown 438.0
2397 Male, age 61, right hemisphere 388.9
2578 Male, age 74, both hemispheres 346.6
2197 Male, age 80, both hemispheres 342.6
Ventral posteromedial thalamic nucleus
nTPM: 379.8
2281 Male, age 75, right hemisphere 508.9
2127 Male, age 76, right hemisphere 402.2
2758 Male, age 80, both hemispheres 339.5
2653 Male, age 74, both hemispheres 334.2
2202 Male, age 61, left hemisphere 314.4
Ventral thalamic nuclei
nTPM: 418.6
2858 Female, age 72, unknown 505.0
2291 Female, age 72, unknown 456.7
2580 Male, age 66, unknown 448.6
1860 Male, age 76, both hemispheres 437.7
1845 Male, age 48, unknown 410.1
2652 Male, age 74, left hemisphere 403.3
2204 Male, age 80, both hemispheres 397.3
2285 Male, age 62, unknown 368.9
1912 Female, age 42, unknown 339.9
Ventromedial nucleus
nTPM: 254.2
1822 Female, age 42, unknown 255.3
1982 Female, age 72, unknown 253.2
Zona incerta
nTPM: 418.1
2215 Male, age 66, unknown 446.8
2822 Male, age 74, right hemisphere 442.9
2403 Male, age 62, unknown 439.8
2663 Female, age 72, unknown 413.0
2208 Male, age 80, right hemisphere 348.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 534.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 534.6
FF:10154-103A1 76 years, female 534.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 614.2
Pig sample Sample description nTPM
Thalamus
nTPM: 614.2
Samples: 4

Max nTPM: 1364.5
Min nTPM: 313.6
Sample A Female 373.3
Sample B Female 313.6
Sample C Male 405.3
Sample D Male 1364.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 81.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 81.1
Samples: 4

Max nTPM: 91.4
Min nTPM: 66.0
Sample A Male 87.3
Sample B Male 66.0
Sample C Female 91.4
Sample D Female 79.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 3.4
671 Antisense, RP_Baylor_102908, Mouse strain C57BL/6J (56 days, male) 3.4
670 Antisense, RP_Baylor_102908, Mouse strain C57BL/6J (56 days, male) 3.2

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