MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:504.7 nTPM
HPA:504.7 nTPM
GTEx:495.6 nTPM
FANTOM5:741.9 Scaled Tags Per Million
Pig:928.1 nTPM
Mouse:70.8 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 504.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 433.5
2411 Female, age 72, unknown 503.7
1870 Female, age 42, unknown 494.2
1833 Male, age 53, unknown 492.0
1830 Male, age 51, unknown 489.4
2828 Female, age 72, unknown 457.4
2019 Male, age 18, unknown 432.5
1827 Male, age 72, unknown 379.0
2586 Male, age 75, left hemisphere 373.1
2666 Male, age 74, left hemisphere 356.8
2219 Male, age 76, both hemispheres 356.6
Dorsal raphe nucleus
nTPM: 372.7
2750 Male, age 76, both hemispheres 504.9
2016 Female, age 72, unknown 374.4
1828 Male, age 53, unknown 364.9
2298 Female, age 72, unknown 313.6
2047 Male, age 72, unknown 305.6
Inferior colliculus
nTPM: 364.5
2849 Male, age 72, unknown 386.3
1848 Female, age 42, unknown 377.0
1890 Male, age 53, unknown 362.7
2097 Female, age 72, unknown 332.2
Median raphe nucleus
nTPM: 374.3
2220 Male, age 76, midline 374.3
Pedunculopontine tegmental nucleus
nTPM: 396.1
2334 Male, age 80, both hemispheres 439.0
1921 Female, age 85, both hemispheres 383.4
2338 Male, age 61, both hemispheres 366.0
Periaquaductal grey, anterior
nTPM: 324.9
2502 Female, age 75, unknown 353.8
1947 Male, age 18, unknown 313.4
1795 Male, age 51, unknown 307.4
Periaquaductal grey, dorsal
nTPM: 331.7
2464 Female, age 72, unknown 376.1
1831 Male, age 72, unknown 344.7
2850 Male, age 76, both hemispheres 311.0
1840 Male, age 53, unknown 295.0
Periaquaductal grey, lateral
nTPM: 329.1
2053 Male, age 18, unknown 356.5
2272 Male, age 74, both hemispheres 335.4
2140 Male, age 76, both hemispheres 295.5
Pretectal area
nTPM: 360.3
2667 Female, age 75, unknown 432.5
1815 Male, age 53, unknown 407.1
2316 Male, age 76, right hemisphere 382.9
2407 Male, age 75, both hemispheres 375.8
2825 Male, age 18, unknown 373.4
1817 Female, age 42, unknown 367.4
2273 Male, age 74, both hemispheres 342.9
2224 Female, age 72, unknown 335.6
2007 Male, age 72, unknown 333.6
1944 Female, age 72, unknown 314.2
1816 Male, age 51, unknown 297.5
Red nucleus
nTPM: 504.7
2823 Male, age 76, right hemisphere 580.2
2769 Male, age 72, unknown 574.7
2227 Male, age 72, unknown 554.7
1865 Male, age 51, unknown 546.7
1821 Female, age 72, unknown 541.7
1904 Male, age 53, unknown 540.0
1954 Female, age 42, unknown 500.6
2503 Female, age 72, unknown 494.5
2785 Male, age 18, unknown 483.5
2588 Male, age 74, left hemisphere 448.1
2584 Male, age 75, left hemisphere 413.5
2725 Female, age 75, unknown 378.0
Substantia nigra
nTPM: 362.5
2699 Male, age 18, unknown 416.4
2583 Male, age 75, right hemisphere 415.7
1851 Male, age 51, unknown 398.3
1889 Female, age 72, unknown 382.5
2409 Female, age 72, unknown 347.5
2590 Female, age 75, unknown 343.2
1941 Male, age 53, unknown 342.9
1916 Female, age 42, unknown 335.0
2665 Male, age 74, both hemispheres 326.0
2241 Male, age 72, unknown 317.4
Superior colliculus
nTPM: 391.8
1913 Female, age 42, unknown 486.4
1995 Male, age 72, unknown 479.0
2587 Male, age 74, left hemisphere 415.3
1839 Male, age 51, unknown 407.4
1895 Male, age 76, right hemisphere 406.6
2668 Female, age 75, unknown 387.4
1796 Male, age 53, unknown 363.6
2664 Male, age 75, both hemispheres 338.1
2087 Female, age 72, unknown 325.1
2261 Male, age 18, unknown 308.9
Ventral tegmental area
nTPM: 411.9
2223 Female, age 72, unknown 554.7
2410 Female, age 72, unknown 425.6
2218 Male, age 76, both hemispheres 385.3
1942 Male, age 51, unknown 372.4
2021 Male, age 53, unknown 368.4
1915 Female, age 42, unknown 365.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 495.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 495.6
Samples: 139

Max nTPM: 1260.8
Min nTPM: 135.6
Std nTPM: 199.8
Median nTPM: 466.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1260.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1237.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1021.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 948.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 915.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 913.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 887.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 840.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 840.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 831.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 821.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 741.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 741.9
FF:10158-103A5 76 years, female 741.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 928.1
Pig sample Sample description nTPM
Midbrain
nTPM: 928.1
Samples: 4

Max nTPM: 2536.1
Min nTPM: 311.0
Sample A Female 2536.1
Sample B Female 539.5
Sample C Male 325.7
Sample D Male 311.0
Periaqueductal gray
nTPM: 366.9
Samples: 3

Max nTPM: 413.6
Min nTPM: 297.9
Sample B Female 413.6
Sample C Male 297.9
Sample D Male 389.2
Substantia nigra
nTPM: 597.5
Samples: 4

Max nTPM: 1020.0
Min nTPM: 285.9
Sample A Female 663.9
Sample B Female 285.9
Sample C Male 420.0
Sample D Male 1020.0
Superior colliculi
nTPM: 531.0
Samples: 4

Max nTPM: 665.6
Min nTPM: 295.7
Sample A Female 639.7
Sample B Female 295.7
Sample C Male 523.1
Sample D Male 665.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.8
Samples: 4

Max nTPM: 78.2
Min nTPM: 62.0
Sample A Male 75.7
Sample B Male 62.0
Sample C Female 67.4
Sample D Female 78.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
671 Antisense, RP_Baylor_102908, Mouse strain C57BL/6J (56 days, male) 4.0
670 Antisense, RP_Baylor_102908, Mouse strain C57BL/6J (56 days, male) 2.9
672 Sense, RPS_Baylor_37014, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.