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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:348.2 nTPM
HPA:348.2 nTPM
GTEx:434.3 nTPM
FANTOM5:245.9 Scaled Tags Per Million
Mouse:336.3 nTPM
Allen mouse:19.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 348.2
Sample id Sample description nTPM
Amygdala
nTPM: 348.2
2814 Male, age 76, right hemisphere 361.9
2514 Male, age 75, right hemisphere 348.7
2695 Female, age 67, right hemisphere 347.4
2517 Female, age 94, left hemisphere 344.5
1987 Female, age 91, left hemisphere 338.5
Basal amygdala
nTPM: 334.1
2609 Male, age 75, right hemisphere 344.9
2243 Female, age 91, right hemisphere 342.6
2110 Male, age 80, left hemisphere 341.2
2827 Female, age 67, right hemisphere 338.6
1955 Male, age 76, both hemispheres 330.5
2685 Female, age 94, left hemisphere 307.1
Central amygdala
nTPM: 347.0
2826 Female, age 94, left hemisphere 358.0
1905 Male, age 76, both hemispheres 353.4
2239 Male, age 80, left hemisphere 352.9
2515 Male, age 75, right hemisphere 339.1
2701 Female, age 91, right hemisphere 331.8
Corticomedial amygdala
nTPM: 335.5
2535 Female, age 67, right hemisphere 371.8
2242 Female, age 91, right hemisphere 343.6
2829 Male, age 80, left hemisphere 329.3
2240 Male, age 76, both hemispheres 328.6
2428 Male, age 75, right hemisphere 320.1
2429 Female, age 94, left hemisphere 319.5
Lateral amygdala
nTPM: 342.4
1883 Male, age 76, both hemispheres 354.1
2516 Male, age 75, right hemisphere 352.8
2534 Female, age 94, left hemisphere 349.1
2255 Female, age 91, right hemisphere 336.9
2830 Female, age 67, right hemisphere 332.5
2256 Male, age 80, left hemisphere 328.7
Stria terminalis, bed nucleus
nTPM: 329.6
1974 Female, age 91, both hemispheres 344.1
2201 Male, age 74, unknown 325.0
2486 Female, age 94, both hemispheres 319.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 434.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 434.3
Samples: 152

Max nTPM: 834.6
Min nTPM: 243.5
Std nTPM: 95.7
Median nTPM: 417.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 834.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 825.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 753.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 711.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 700.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 671.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 650.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 639.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 615.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 603.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 598.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 569.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 566.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 542.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 537.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 535.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 533.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 532.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 527.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 518.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 510.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 508.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 507.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 504.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 502.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 501.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 500.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 498.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 493.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 492.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 476.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 475.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 474.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 473.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 473.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 472.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 470.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 467.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 464.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 464.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 461.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 458.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 456.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 456.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 453.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 452.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 452.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 451.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 449.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 449.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 446.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 444.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 444.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 443.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 442.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 442.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 442.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 441.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 441.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 440.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 439.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 436.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 433.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 432.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 429.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 428.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 427.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 426.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 426.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 424.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 424.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 423.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 422.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 420.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 418.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 417.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 417.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 416.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 414.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 414.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 412.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 412.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 412.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 410.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 408.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 408.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 407.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 406.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 406.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 406.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 405.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 404.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 403.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 402.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 402.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 399.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 397.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 396.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 396.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 392.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 388.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 388.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 384.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 383.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 382.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 382.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 382.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 382.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 378.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 375.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 375.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 374.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 374.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 370.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 370.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 368.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 366.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 366.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 365.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 363.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 362.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 361.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 360.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 358.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 357.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 357.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 354.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 352.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 352.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 352.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 349.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 349.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 349.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 348.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 347.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 345.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 344.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 343.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 341.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 340.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 340.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 339.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 338.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 336.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 334.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 318.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 315.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 297.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 292.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 272.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 270.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 243.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 245.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 245.9
FF:10151-102I7 76 years, female 245.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 336.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 336.3
Samples: 4

Max nTPM: 352.3
Min nTPM: 310.7
Sample A Male 344.0
Sample B Male 310.7
Sample C Female 352.3
Sample D Female 338.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 19.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.4
69446589 Antisense, RP_050419_01_E08, Mouse strain C57BL/6J (56 days, male) 19.4

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