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MRFAP1
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:367.5 nTPM
HPA:367.5 nTPM
FANTOM5:296.6 Scaled Tags Per Million
Allen mouse:13.8 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 367.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 343.7
2188 Female, age 91, both hemispheres 359.0
2090 Male, age 80, both hemispheres 351.5
2301 Female, age 85, both hemispheres 344.0
1984 Male, age 76, both hemispheres 320.5
Dorsal cochlear nucleus
nTPM: 335.8
2187 Female, age 91, both hemispheres 362.0
2802 Male, age 74, right hemisphere 342.8
2058 Male, age 76, both hemispheres 340.9
2370 Male, age 61, both hemispheres 322.0
2378 Male, age 80, both hemispheres 311.2
Dorsal tegmental nucleus
nTPM: 346.9
2083 Male, age 80, both hemispheres 395.7
2326 Male, age 74, both hemispheres 335.0
1936 Male, age 76, left hemisphere 328.9
2358 Male, age 61, both hemispheres 328.2
Dorsolateral tegmental area
nTPM: 343.3
2654 Male, age 80, both hemispheres 357.1
2337 Male, age 61, both hemispheres 354.7
2751 Female, age 85, both hemispheres 354.0
2141 Male, age 76, both hemispheres 342.7
2360 Male, age 74, both hemispheres 307.8
Kolliker-Fuse nucleus
nTPM: 351.5
2163 Male, age 80, both hemispheres 355.3
2793 Female, age 91, left hemisphere 354.7
2315 Male, age 76, right hemisphere 344.5
Lateral lemniscal nuclei
nTPM: 334.6
2453 Male, age 74, right hemisphere 360.9
2169 Male, age 76, both hemispheres 356.4
2320 Female, age 91, left hemisphere 333.7
2746 Female, age 85, left hemisphere 331.5
2036 Male, age 80, both hemispheres 290.3
Lateral parabrachial nucleus
nTPM: 343.2
2139 Female, age 85, right hemisphere 375.6
2792 Male, age 76, both hemispheres 348.9
2013 Male, age 80, both hemispheres 327.2
2790 Male, age 61, both hemispheres 321.3
Lateral vestibular nucleus
nTPM: 351.7
2311 Male, age 80, both hemispheres 353.9
2184 Male, age 76, both hemispheres 349.5
Locus coeruleus
nTPM: 361.7
2123 Female, age 91, both hemispheres 384.3
2720 Male, age 74, both hemispheres 370.3
2014 Male, age 55, unknown 363.3
2788 Male, age 74, unknown 359.0
1980 Male, age 76, both hemispheres 354.7
2162 Male, age 80, both hemispheres 352.5
2317 Female, age 72, unknown 348.1
Medial olivary nucleus
nTPM: 354.0
2138 Female, age 91, both hemispheres 366.4
1943 Male, age 61, both hemispheres 357.2
1962 Male, age 76, both hemispheres 348.7
2851 Male, age 80, both hemispheres 343.6
Medial parabrachial nucleus
nTPM: 349.2
2170 Female, age 91, both hemispheres 367.8
2156 Male, age 61, both hemispheres 353.7
2854 Male, age 80, both hemispheres 343.5
2463 Female, age 85, right hemisphere 343.4
2786 Male, age 76, both hemispheres 337.9
Medial periolivary nuclei
nTPM: 348.7
2171 Female, age 85, both hemispheres 369.4
2063 Male, age 76, both hemispheres 368.3
2458 Female, age 91, both hemispheres 344.1
2081 Male, age 80, both hemispheres 343.9
2791 Male, age 74, right hemisphere 317.6
Motor facial nucleus
nTPM: 355.3
2062 Male, age 76, both hemispheres 379.6
2126 Male, age 61, both hemispheres 371.4
2697 Female, age 85, both hemispheres 359.2
2327 Male, age 80, both hemispheres 349.9
2365 Male, age 74, right hemisphere 349.9
2795 Female, age 91, both hemispheres 321.9
Motor trigeminal nucleus
nTPM: 349.8
2079 Male, age 80, both hemispheres 368.9
2335 Male, age 61, both hemispheres 355.5
2309 Male, age 76, both hemispheres 345.3
2321 Female, age 91, both hemispheres 341.8
2560 Male, age 74, both hemispheres 337.4
Nuclei of the trapezoid body
nTPM: 355.5
1983 Male, age 76, both hemispheres 384.2
2159 Male, age 61, both hemispheres 371.8
2735 Female, age 85, both hemispheres 351.7
2166 Male, age 80, both hemispheres 347.2
2368 Female, age 91, both hemispheres 322.8
Paramedian reticular nucleus
nTPM: 348.5
2057 Male, age 80, both hemispheres 357.3
2052 Male, age 76, both hemispheres 346.0
2050 Female, age 85, both hemispheres 345.8
2313 Male, age 61, both hemispheres 344.8
Pontine nuclei
nTPM: 365.8
2787 Female, age 85, both hemispheres 410.0
1863 Male, age 55, unknown 377.1
2727 Male, age 61, right hemisphere 374.2
2454 Male, age 74, left hemisphere 362.7
1968 Male, age 76, left hemisphere 361.3
2109 Female, age 72, unknown 357.8
2115 Male, age 80, left hemisphere 346.5
2319 Female, age 91, both hemispheres 337.3
Pontine raphe nucleus
nTPM: 357.8
2122 Female, age 85, midline 368.3
2853 Male, age 76, midline 347.3
Posteroventral cochlear nucleus
nTPM: 345.2
2135 Female, age 91, both hemispheres 367.0
2752 Female, age 85, both hemispheres 357.8
2070 Male, age 76, both hemispheres 351.8
2341 Male, age 80, both hemispheres 336.1
2371 Male, age 61, both hemispheres 313.1
Principal sensory trigeminal nucleus
nTPM: 348.3
2158 Male, age 61, both hemispheres 376.3
2367 Female, age 91, left hemisphere 348.1
2324 Male, age 76, both hemispheres 341.0
2008 Male, age 80, left hemisphere 327.9
Reticular pontine nucleus, caudal
nTPM: 367.5
2457 Female, age 91, both hemispheres 387.2
2092 Male, age 76, both hemispheres 368.1
2559 Male, age 74, both hemispheres 357.6
2332 Male, age 80, right hemisphere 357.2
Reticular pontine nucleus, oral
nTPM: 349.6
2366 Female, age 91, both hemispheres 359.9
1939 Male, age 80, both hemispheres 353.1
2167 Male, age 76, both hemispheres 348.3
2361 Male, age 74, both hemispheres 347.0
2012 Female, age 85, both hemispheres 339.5
Reticulotegmental nucleus
nTPM: 356.9
2322 Female, age 91, both hemispheres 366.6
2325 Male, age 76, both hemispheres 355.5
2452 Male, age 74, both hemispheres 355.3
2333 Male, age 80, both hemispheres 350.2
Spinal trigeminal nucleus, oral
nTPM: 345.7
2164 Male, age 80, both hemispheres 366.7
1978 Male, age 76, both hemispheres 338.3
2737 Female, age 85, both hemispheres 332.2
Subcoeruleus area
nTPM: 345.1
1958 Male, age 80, both hemispheres 347.6
2323 Female, age 91, left hemisphere 347.0
2369 Female, age 85, left hemisphere 346.8
2451 Male, age 74, both hemispheres 343.9
2089 Male, age 76, left hemisphere 340.1
Superior olive
nTPM: 339.7
1875 Female, age 85, both hemispheres 350.4
2020 Male, age 76, both hemispheres 348.9
2329 Male, age 80, right hemisphere 345.0
2364 Male, age 74, right hemisphere 328.8
2561 Female, age 91, both hemispheres 325.4
Superior vestibular nucleus
nTPM: 337.5
2061 Male, age 76, both hemispheres 347.4
2015 Male, age 80, both hemispheres 334.9
2383 Male, age 74, both hemispheres 330.1
Ventral periolivary nuclei
nTPM: 352.2
2165 Male, age 80, both hemispheres 380.1
2130 Female, age 85, both hemispheres 363.5
2023 Male, age 76, both hemispheres 351.2
2794 Female, age 91, left hemisphere 314.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 342.3
2449 Male, age 74, both hemispheres 365.2
1959 Male, age 76, both hemispheres 345.6
2840 Female, age 85, both hemispheres 341.8
2161 Male, age 80, both hemispheres 339.4
2359 Male, age 61, both hemispheres 333.5
2456 Female, age 91, both hemispheres 328.2

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 296.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 296.6
FF:10182-103D2 60 years, female 332.3
FF:10165-103B3 76 years, female 260.9
Pons
Scaled Tags Per Million: 231.3
FF:10033-101E6 18-54 years, mixed 231.3

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 13.8
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 13.8
69446589 Antisense, RP_050419_01_E08, Mouse strain C57BL/6J (56 days, male) 13.8

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