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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:358.3 nTPM
HPA:358.3 nTPM
GTEx:506.4 nTPM
FANTOM5:304.1 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 358.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 354.7
1981 Female, age 72, midline 371.5
2194 Female, age 79, both hemispheres 367.0
2816 Male, age 47, midline 348.3
2565 Male, age 75, midline 346.6
2048 Male, age 55, midline 340.0
Cervical spinal cord, dorsal horn
nTPM: 355.6
2296 Male, age 66, both hemispheres 386.5
2173 Female, age 72, unknown 380.0
2069 Male, age 47, both hemispheres 352.8
1877 Male, age 55, unknown 351.3
2721 Male, age 90, both hemispheres 337.3
2297 Male, age 75, both hemispheres 325.6
Cervical spinal cord, ventral horn
nTPM: 358.3
2809 Male, age 90, both hemispheres 367.1
2068 Male, age 55, unknown 366.8
2098 Female, age 72, unknown 361.8
2480 Male, age 75, both hemispheres 355.4
2820 Female, age 79, both hemispheres 353.8
2295 Male, age 66, both hemispheres 345.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 506.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 506.4
Samples: 159

Max nTPM: 885.5
Min nTPM: 289.6
Std nTPM: 103.2
Median nTPM: 506.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 885.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 819.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 817.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 727.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 712.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 701.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 681.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 669.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 666.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 656.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 656.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 655.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 646.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 641.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 640.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 638.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 638.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 622.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 621.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 619.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 619.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 616.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 613.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 613.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 610.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 609.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 606.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 605.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 605.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 601.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 598.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 596.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 593.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 591.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 584.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 582.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 582.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 574.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 571.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 566.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 565.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 564.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 564.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 564.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 564.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 559.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 554.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 553.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 551.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 550.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 550.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 550.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 547.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 547.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 545.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 543.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 543.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 535.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 533.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 533.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 533.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 532.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 530.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 528.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 528.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 525.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 525.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 523.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 520.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 519.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 518.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 513.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 513.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 513.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 512.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 512.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 511.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 510.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 508.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 506.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 499.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 497.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 496.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 496.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 494.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 483.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 481.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 480.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 477.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 474.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 474.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 474.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 473.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 473.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 473.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 472.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 470.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 468.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 465.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 465.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 458.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 456.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 455.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 454.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 454.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 454.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 452.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 448.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 448.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 447.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 447.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 445.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 441.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 440.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 437.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 434.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 432.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 432.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 432.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 431.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 426.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 423.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 422.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 420.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 419.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 419.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 419.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 417.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 416.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 414.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 410.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 410.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 408.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 408.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 407.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 403.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 403.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 397.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 397.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 383.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 381.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 381.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 381.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 379.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 379.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 374.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 370.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 370.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 366.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 360.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 360.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 359.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 340.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 340.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 331.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 323.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 317.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 313.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 289.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 304.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 304.1
FF:10181-103D1 60 years, female 381.6
FF:10159-103A6 76 years, female 226.6

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