MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:362.8 nTPM
HPA:362.8 nTPM
GTEx:457.4 nTPM
FANTOM5:266.3 Scaled Tags Per Million
Mouse:339.8 nTPM
Allen mouse:18.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 362.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 337.4
1870 Female, age 42, unknown 356.0
2586 Male, age 75, left hemisphere 349.4
1827 Male, age 72, unknown 346.5
2828 Female, age 72, unknown 337.1
2019 Male, age 18, unknown 335.9
1830 Male, age 51, unknown 333.7
2411 Female, age 72, unknown 331.5
2666 Male, age 74, left hemisphere 331.0
1833 Male, age 53, unknown 330.6
2219 Male, age 76, both hemispheres 322.0
Dorsal raphe nucleus
nTPM: 335.1
2750 Male, age 76, both hemispheres 352.9
1828 Male, age 53, unknown 334.8
2047 Male, age 72, unknown 333.5
2298 Female, age 72, unknown 332.4
2016 Female, age 72, unknown 322.2
Inferior colliculus
nTPM: 330.4
2097 Female, age 72, unknown 334.5
2849 Male, age 72, unknown 330.8
1848 Female, age 42, unknown 329.5
1890 Male, age 53, unknown 327.0
Median raphe nucleus
nTPM: 362.8
2220 Male, age 76, midline 362.8
Pedunculopontine tegmental nucleus
nTPM: 345.8
2334 Male, age 80, both hemispheres 354.6
2338 Male, age 61, both hemispheres 347.8
1921 Female, age 85, both hemispheres 335.1
Periaquaductal grey, anterior
nTPM: 337.0
1947 Male, age 18, unknown 343.7
2502 Female, age 75, unknown 338.1
1795 Male, age 51, unknown 329.1
Periaquaductal grey, dorsal
nTPM: 327.6
1840 Male, age 53, unknown 337.1
2850 Male, age 76, both hemispheres 336.1
1831 Male, age 72, unknown 319.3
2464 Female, age 72, unknown 318.0
Periaquaductal grey, lateral
nTPM: 326.6
2140 Male, age 76, both hemispheres 341.2
2053 Male, age 18, unknown 320.8
2272 Male, age 74, both hemispheres 317.8
Pretectal area
nTPM: 341.9
1817 Female, age 42, unknown 353.2
2007 Male, age 72, unknown 350.6
1815 Male, age 53, unknown 349.2
1816 Male, age 51, unknown 346.3
2825 Male, age 18, unknown 344.7
1944 Female, age 72, unknown 342.4
2667 Female, age 75, unknown 339.7
2407 Male, age 75, both hemispheres 339.3
2224 Female, age 72, unknown 339.2
2316 Male, age 76, right hemisphere 331.6
2273 Male, age 74, both hemispheres 325.1
Red nucleus
nTPM: 348.5
2503 Female, age 72, unknown 374.3
2725 Female, age 75, unknown 364.2
1821 Female, age 72, unknown 356.1
1954 Female, age 42, unknown 350.6
1865 Male, age 51, unknown 349.3
2588 Male, age 74, left hemisphere 346.2
2785 Male, age 18, unknown 342.1
2227 Male, age 72, unknown 341.4
2584 Male, age 75, left hemisphere 339.6
1904 Male, age 53, unknown 339.5
2769 Male, age 72, unknown 339.2
2823 Male, age 76, right hemisphere 339.0
Substantia nigra
nTPM: 344.0
1916 Female, age 42, unknown 368.9
2241 Male, age 72, unknown 361.9
1851 Male, age 51, unknown 356.5
1941 Male, age 53, unknown 350.3
1889 Female, age 72, unknown 350.0
2699 Male, age 18, unknown 345.5
2665 Male, age 74, both hemispheres 340.2
2590 Female, age 75, unknown 332.7
2409 Female, age 72, unknown 317.0
2583 Male, age 75, right hemisphere 316.9
Superior colliculus
nTPM: 334.3
1895 Male, age 76, right hemisphere 346.7
1796 Male, age 53, unknown 342.0
1913 Female, age 42, unknown 337.1
2087 Female, age 72, unknown 336.8
2664 Male, age 75, both hemispheres 335.3
2261 Male, age 18, unknown 334.8
1839 Male, age 51, unknown 332.3
2668 Female, age 75, unknown 331.0
1995 Male, age 72, unknown 324.9
2587 Male, age 74, left hemisphere 322.5
Ventral tegmental area
nTPM: 342.8
2223 Female, age 72, unknown 359.4
1915 Female, age 42, unknown 358.8
2218 Male, age 76, both hemispheres 350.0
1942 Male, age 51, unknown 337.3
2021 Male, age 53, unknown 328.6
2410 Female, age 72, unknown 322.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 457.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 457.4
Samples: 139

Max nTPM: 755.4
Min nTPM: 317.8
Std nTPM: 73.0
Median nTPM: 454.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 755.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 726.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 700.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 638.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 631.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 617.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 601.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 585.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 566.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 557.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 557.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 266.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 266.3
FF:10158-103A5 76 years, female 266.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 339.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 339.8
Samples: 4

Max nTPM: 344.2
Min nTPM: 332.5
Sample A Male 332.5
Sample B Male 341.5
Sample C Female 340.9
Sample D Female 344.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 18.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.7
69446589 Antisense, RP_050419_01_E08, Mouse strain C57BL/6J (56 days, male) 18.7

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