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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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87.322
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:50.5 nTPM
HPA:50.5 nTPM
FANTOM5:140.7 Scaled Tags Per Million
Mouse:19.4 nTPM

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA071379
Pons mean intensity 87.322
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 31.770
Parabrachial nucleus 39.806
Principle sensory trigeminal nucleus 34.853
Locus coeruleus 87.322
Pontine nucleus 27.764
Vestibular nucleus 59.174
Pontine reticular nucleus, oral 34.576
Lateral lemniscus 33.783
Superior paraolivary nucleus 36.047

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 50.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 33.1
2301 Female, age 85, both hemispheres 47.7
2090 Male, age 80, both hemispheres 31.1
2188 Female, age 91, both hemispheres 31.0
1984 Male, age 76, both hemispheres 22.6
Area postrema
nTPM: 48.1
2306 Male, age 80, both hemispheres 57.8
2799 Male, age 61, both hemispheres 50.7
2054 Male, age 76, both hemispheres 35.9
Cuneate nuclei
nTPM: 36.3
2376 Male, age 61, both hemispheres 39.6
2381 Male, age 80, both hemispheres 35.3
2131 Male, age 76, both hemispheres 34.1
Dorsal cochlear nucleus
nTPM: 32.8
2370 Male, age 61, both hemispheres 35.6
2187 Female, age 91, both hemispheres 35.5
2802 Male, age 74, right hemisphere 32.8
2378 Male, age 80, both hemispheres 32.3
2058 Male, age 76, both hemispheres 28.1
Dorsal medullary reticular nucleus
nTPM: 36.6
2373 Male, age 61, both hemispheres 41.8
2088 Male, age 76, both hemispheres 37.5
2040 Female, age 85, both hemispheres 30.7
Dorsal motor vagal complex
nTPM: 46.0
2813 Female, age 72, unknown 63.6
2797 Male, age 61, both hemispheres 54.6
2844 Male, age 55, unknown 53.1
2185 Male, age 76, both hemispheres 52.9
2000 Male, age 74, unknown 50.9
2643 Male, age 74, both hemispheres 37.8
2133 Female, age 91, both hemispheres 29.9
2807 Female, age 85, both hemispheres 24.9
Dorsal tegmental nucleus
nTPM: 41.0
1936 Male, age 76, left hemisphere 45.9
2083 Male, age 80, both hemispheres 41.6
2358 Male, age 61, both hemispheres 38.7
2326 Male, age 74, both hemispheres 37.7
Dorsolateral tegmental area
nTPM: 41.9
2337 Male, age 61, both hemispheres 47.8
2360 Male, age 74, both hemispheres 41.6
2654 Male, age 80, both hemispheres 40.4
2751 Female, age 85, both hemispheres 40.0
2141 Male, age 76, both hemispheres 39.9
Gigantocellular reticular nuclei, medullary
nTPM: 34.5
2314 Male, age 61, both hemispheres 58.1
1876 Female, age 85, both hemispheres 34.8
2022 Male, age 76, right hemisphere 34.5
2387 Female, age 91, both hemispheres 29.7
2462 Male, age 74, both hemispheres 25.1
2310 Male, age 80, both hemispheres 24.8
Gigantocellular reticular nuclei, pars
nTPM: 37.1
2336 Male, age 61, both hemispheres 43.6
2084 Female, age 85, both hemispheres 39.7
2330 Male, age 80, both hemispheres 37.9
2168 Male, age 76, both hemispheres 32.3
2706 Male, age 80, both hemispheres 31.8
Inferior olive
nTPM: 50.5
2085 Female, age 85, both hemispheres 53.8
2178 Male, age 61, both hemispheres 53.1
2563 Male, age 74, both hemispheres 51.7
2628 Female, age 91, both hemispheres 50.4
2379 Male, age 80, both hemispheres 43.5
Kolliker-Fuse nucleus
nTPM: 33.0
2163 Male, age 80, both hemispheres 37.5
2793 Female, age 91, left hemisphere 34.9
2315 Male, age 76, right hemisphere 26.6
Lateral lemniscal nuclei
nTPM: 28.4
2169 Male, age 76, both hemispheres 34.3
2320 Female, age 91, left hemisphere 30.8
2746 Female, age 85, left hemisphere 29.2
2453 Male, age 74, right hemisphere 27.8
2036 Male, age 80, both hemispheres 19.9
Lateral medullary reticular nucleus
nTPM: 44.4
2374 Male, age 61, both hemispheres 60.4
2305 Male, age 74, both hemispheres 48.4
2804 Female, age 91, both hemispheres 46.0
2852 Male, age 80, both hemispheres 42.9
2190 Female, age 85, both hemispheres 40.1
2044 Male, age 76, both hemispheres 28.7
Lateral parabrachial nucleus
nTPM: 34.6
2792 Male, age 76, both hemispheres 39.9
2013 Male, age 80, both hemispheres 35.3
2139 Female, age 85, right hemisphere 31.9
2790 Male, age 61, both hemispheres 31.3
Lateral vestibular nucleus
nTPM: 44.9
2311 Male, age 80, both hemispheres 47.9
2184 Male, age 76, both hemispheres 41.9
Locus coeruleus
nTPM: 34.3
2317 Female, age 72, unknown 42.2
1980 Male, age 76, both hemispheres 34.9
2123 Female, age 91, both hemispheres 34.4
2162 Male, age 80, both hemispheres 34.2
2788 Male, age 74, unknown 32.3
2014 Male, age 55, unknown 31.1
2720 Male, age 74, both hemispheres 30.8
Medial olivary nucleus
nTPM: 44.5
2138 Female, age 91, both hemispheres 52.2
1943 Male, age 61, both hemispheres 49.9
2851 Male, age 80, both hemispheres 44.8
1962 Male, age 76, both hemispheres 31.2
Medial parabrachial nucleus
nTPM: 38.3
2786 Male, age 76, both hemispheres 44.8
2156 Male, age 61, both hemispheres 39.9
2170 Female, age 91, both hemispheres 38.6
2463 Female, age 85, right hemisphere 35.0
2854 Male, age 80, both hemispheres 33.5
Medial periolivary nuclei
nTPM: 27.2
2791 Male, age 74, right hemisphere 34.5
2458 Female, age 91, both hemispheres 28.3
2063 Male, age 76, both hemispheres 24.6
2171 Female, age 85, both hemispheres 24.3
2081 Male, age 80, both hemispheres 24.2
Medial vestibular nucleus
nTPM: 38.0
2801 Male, age 74, both hemispheres 44.4
2743 Female, age 85, both hemispheres 42.5
2624 Male, age 61, both hemispheres 39.0
2803 Female, age 91, both hemispheres 37.4
2093 Male, age 80, both hemispheres 34.7
2134 Male, age 76, both hemispheres 30.0
Motor facial nucleus
nTPM: 31.3
2795 Female, age 91, both hemispheres 35.2
2126 Male, age 61, both hemispheres 33.2
2062 Male, age 76, both hemispheres 32.7
2365 Male, age 74, right hemisphere 32.0
2697 Female, age 85, both hemispheres 31.6
2327 Male, age 80, both hemispheres 23.3
Motor hypoglossal nucleus
nTPM: 36.3
2461 Male, age 61, both hemispheres 52.2
2277 Male, age 76, both hemispheres 39.9
2125 Female, age 91, both hemispheres 34.5
2182 Male, age 80, both hemispheres 33.3
2132 Female, age 85, both hemispheres 21.6
Motor trigeminal nucleus
nTPM: 33.0
2309 Male, age 76, both hemispheres 44.8
2335 Male, age 61, both hemispheres 37.2
2321 Female, age 91, both hemispheres 31.7
2560 Male, age 74, both hemispheres 27.9
2079 Male, age 80, both hemispheres 23.3
Nuclei of the trapezoid body
nTPM: 26.2
2368 Female, age 91, both hemispheres 29.3
1983 Male, age 76, both hemispheres 28.6
2166 Male, age 80, both hemispheres 27.8
2159 Male, age 61, both hemispheres 26.4
2735 Female, age 85, both hemispheres 19.1
Nucleus ambiguus
nTPM: 30.4
2071 Male, age 76, both hemispheres 36.6
2096 Female, age 85, both hemispheres 24.2
Nucleus cuneatus
nTPM: 41.5
2805 Female, age 91, both hemispheres 45.5
2380 Male, age 80, both hemispheres 43.4
2564 Male, age 74, both hemispheres 43.4
2562 Male, age 61, both hemispheres 41.0
2808 Female, age 85, both hemispheres 39.2
2100 Male, age 76, both hemispheres 36.8
Nucleus gracilis
nTPM: 46.7
2627 Male, age 74, both hemispheres 54.7
2299 Female, age 85, both hemispheres 48.9
2382 Male, age 80, both hemispheres 36.4
Nucleus raphe magnus
nTPM: 25.3
2455 Male, age 74, both hemispheres 34.5
2328 Male, age 80, both hemispheres 30.9
2051 Male, age 76, both hemispheres 30.4
2459 Female, age 91, both hemispheres 21.2
2160 Male, age 61, both hemispheres 20.7
2172 Female, age 85, both hemispheres 14.4
Nucleus raphe obscurus
nTPM: 36.0
2845 Female, age 85, midline 37.4
2800 Male, age 61, midline 36.7
2142 Male, age 76, midline 34.0
Nucleus raphe pallidus
nTPM: 33.1
2145 Male, age 76, midline 36.8
2183 Male, age 80, midline 34.8
1924 Male, age 61, midline 27.9
Nucleus tractus solitarii
nTPM: 40.6
2191 Female, age 85, both hemispheres 50.4
2656 Male, age 76, both hemispheres 43.0
2144 Female, age 91, right hemisphere 40.7
2307 Male, age 80, both hemispheres 28.3
Paramedian reticular nucleus
nTPM: 28.0
2057 Male, age 80, both hemispheres 32.1
2313 Male, age 61, both hemispheres 29.2
2050 Female, age 85, both hemispheres 25.7
2052 Male, age 76, both hemispheres 25.1
Parvicellular reticular nuclei
nTPM: 33.0
2095 Male, age 76, both hemispheres 36.6
2119 Male, age 80, both hemispheres 36.4
2558 Male, age 74, both hemispheres 25.8
Parvicellular reticular nuclei, medullary
nTPM: 35.0
2189 Female, age 91, both hemispheres 36.2
2181 Male, age 80, left hemisphere 35.3
2091 Female, age 85, both hemispheres 33.6
Peritrigeminal nucleus
nTPM: 36.5
2067 Female, age 85, both hemispheres 40.7
2179 Male, age 61, both hemispheres 39.6
2136 Male, age 76, both hemispheres 29.3
Pontine nuclei
nTPM: 25.2
2454 Male, age 74, left hemisphere 33.1
1968 Male, age 76, left hemisphere 29.9
2319 Female, age 91, both hemispheres 29.3
2115 Male, age 80, left hemisphere 27.7
1863 Male, age 55, unknown 20.9
2109 Female, age 72, unknown 20.9
2727 Male, age 61, right hemisphere 20.0
2787 Female, age 85, both hemispheres 19.8
Pontine raphe nucleus
nTPM: 36.7
2853 Male, age 76, midline 49.0
2122 Female, age 85, midline 24.4
Posteroventral cochlear nucleus
nTPM: 35.2
2371 Male, age 61, both hemispheres 40.5
2070 Male, age 76, both hemispheres 38.4
2135 Female, age 91, both hemispheres 33.1
2341 Male, age 80, both hemispheres 32.8
2752 Female, age 85, both hemispheres 31.0
Prepositus hypoglossal nucleus
nTPM: 38.9
2086 Male, age 80, both hemispheres 43.8
2855 Female, age 85, right hemisphere 34.1
Principal sensory trigeminal nucleus
nTPM: 31.9
2324 Male, age 76, both hemispheres 54.7
2367 Female, age 91, left hemisphere 27.7
2158 Male, age 61, both hemispheres 23.7
2008 Male, age 80, left hemisphere 21.7
Reticular pontine nucleus, caudal
nTPM: 30.3
2559 Male, age 74, both hemispheres 34.0
2092 Male, age 76, both hemispheres 32.4
2457 Female, age 91, both hemispheres 27.9
2332 Male, age 80, right hemisphere 26.7
Reticular pontine nucleus, oral
nTPM: 36.1
2167 Male, age 76, both hemispheres 49.9
1939 Male, age 80, both hemispheres 43.5
2366 Female, age 91, both hemispheres 37.6
2012 Female, age 85, both hemispheres 31.3
2361 Male, age 74, both hemispheres 18.2
Reticulotegmental nucleus
nTPM: 36.8
2333 Male, age 80, both hemispheres 39.7
2322 Female, age 91, both hemispheres 38.5
2325 Male, age 76, both hemispheres 37.2
2452 Male, age 74, both hemispheres 31.8
Spinal trigeminal nucleus, caudal
nTPM: 42.5
2312 Male, age 61, both hemispheres 58.3
2642 Male, age 74, both hemispheres 42.5
2308 Male, age 80, both hemispheres 42.2
2447 Male, age 76, both hemispheres 38.7
2390 Female, age 91, both hemispheres 30.7
Spinal trigeminal nucleus, interpolar
nTPM: 29.8
2625 Male, age 61, both hemispheres 34.7
2389 Female, age 91, both hemispheres 32.0
2033 Male, age 80, both hemispheres 30.7
2386 Female, age 85, both hemispheres 27.6
2066 Male, age 76, right hemisphere 23.9
Spinal trigeminal nucleus, oral
nTPM: 35.3
1978 Male, age 76, both hemispheres 40.8
2737 Female, age 85, both hemispheres 35.0
2164 Male, age 80, both hemispheres 30.3
Spinal vestibular nucleus
nTPM: 36.1
2748 Male, age 76, both hemispheres 39.9
2806 Female, age 85, both hemispheres 38.8
2796 Male, age 61, both hemispheres 37.9
2186 Female, age 91, both hemispheres 36.7
2780 Male, age 80, both hemispheres 32.5
2384 Male, age 74, both hemispheres 30.9
Subcoeruleus area
nTPM: 35.9
2323 Female, age 91, left hemisphere 41.4
2369 Female, age 85, left hemisphere 40.8
1958 Male, age 80, both hemispheres 34.1
2089 Male, age 76, left hemisphere 31.8
2451 Male, age 74, both hemispheres 31.3
Superior olive
nTPM: 28.4
2364 Male, age 74, right hemisphere 35.1
2020 Male, age 76, both hemispheres 30.2
2329 Male, age 80, right hemisphere 28.8
2561 Female, age 91, both hemispheres 27.1
1875 Female, age 85, both hemispheres 21.0
Superior vestibular nucleus
nTPM: 45.2
2383 Male, age 74, both hemispheres 56.3
2015 Male, age 80, both hemispheres 42.4
2061 Male, age 76, both hemispheres 36.8
Ventral medullary reticular nucleus
nTPM: 38.2
2372 Male, age 61, both hemispheres 44.3
2060 Male, age 76, both hemispheres 32.0
Ventral periolivary nuclei
nTPM: 24.3
2165 Male, age 80, both hemispheres 27.4
2023 Male, age 76, both hemispheres 25.1
2794 Female, age 91, left hemisphere 22.8
2130 Female, age 85, both hemispheres 22.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 35.2
2302 Female, age 91, both hemispheres 44.3
2180 Male, age 61, both hemispheres 41.2
2741 Female, age 85, both hemispheres 32.1
2118 Male, age 80, both hemispheres 31.6
1986 Male, age 76, both hemispheres 27.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 31.9
2359 Male, age 61, both hemispheres 42.0
2840 Female, age 85, both hemispheres 35.0
2449 Male, age 74, both hemispheres 31.3
1959 Male, age 76, both hemispheres 30.0
2456 Female, age 91, both hemispheres 27.8
2161 Male, age 80, both hemispheres 25.0

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 140.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 135.4
FF:10165-103B3 76 years, female 153.2
FF:10182-103D2 60 years, female 117.6
Medulla oblongata
Scaled Tags Per Million: 140.7
FF:10155-103A2 76 years, female 162.1
FF:10038-101F2 18-64 years, mixed 148.7
FF:10174-103C3 60 years, female 111.4
Pons
Scaled Tags Per Million: 72.0
FF:10033-101E6 18-54 years, mixed 72.0

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 19.4
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 19.4
Samples: 4

Max nTPM: 23.3
Min nTPM: 17.0
Sample A Male 23.3
Sample B Male 18.9
Sample C Female 17.0
Sample D Female 18.3

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