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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2466.0 nTPM
HPA:2466.0 nTPM
GTEx:1201.2 nTPM
FANTOM5:1794.2 Scaled Tags Per Million
Pig:169.9 nTPM
Mouse:148.2 nTPM
Allen mouse:6.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 2466.0
Sample id Sample description nTPM
Amygdala
nTPM: 2466.0
2814 Male, age 76, right hemisphere 2608.6
2695 Female, age 67, right hemisphere 2548.9
2514 Male, age 75, right hemisphere 2446.4
1987 Female, age 91, left hemisphere 2392.6
2517 Female, age 94, left hemisphere 2333.7
Basal amygdala
nTPM: 2309.1
2609 Male, age 75, right hemisphere 2477.0
1955 Male, age 76, both hemispheres 2372.5
2110 Male, age 80, left hemisphere 2304.8
2827 Female, age 67, right hemisphere 2280.4
2685 Female, age 94, left hemisphere 2279.1
2243 Female, age 91, right hemisphere 2141.0
Central amygdala
nTPM: 2323.1
2515 Male, age 75, right hemisphere 2442.9
1905 Male, age 76, both hemispheres 2402.9
2239 Male, age 80, left hemisphere 2290.3
2701 Female, age 91, right hemisphere 2257.7
2826 Female, age 94, left hemisphere 2221.8
Corticomedial amygdala
nTPM: 2250.2
2428 Male, age 75, right hemisphere 2397.5
2240 Male, age 76, both hemispheres 2354.1
2429 Female, age 94, left hemisphere 2251.8
2535 Female, age 67, right hemisphere 2199.9
2242 Female, age 91, right hemisphere 2169.7
2829 Male, age 80, left hemisphere 2128.2
Lateral amygdala
nTPM: 2354.6
2516 Male, age 75, right hemisphere 2452.2
1883 Male, age 76, both hemispheres 2422.9
2256 Male, age 80, left hemisphere 2413.8
2830 Female, age 67, right hemisphere 2352.8
2255 Female, age 91, right hemisphere 2250.3
2534 Female, age 94, left hemisphere 2235.9
Stria terminalis, bed nucleus
nTPM: 2188.0
1974 Female, age 91, both hemispheres 2229.2
2201 Male, age 74, unknown 2179.8
2486 Female, age 94, both hemispheres 2155.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1201.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1201.2
Samples: 152

Max nTPM: 6948.8
Min nTPM: 328.7
Std nTPM: 1023.3
Median nTPM: 935.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 6948.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 6567.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 5631.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 4869.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3765.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3466.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 3434.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2850.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2804.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2625.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2470.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2366.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2353.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2291.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 2269.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2149.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2079.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2057.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1853.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1830.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1810.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1784.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1764.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1695.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1609.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1600.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1599.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1598.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1576.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1528.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1513.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1460.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1438.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1427.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1397.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1378.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1367.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1324.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1322.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1319.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1293.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1270.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1269.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1228.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1226.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1208.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1208.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1204.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1204.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1169.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1160.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1134.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1130.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1125.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1124.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1120.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1104.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1100.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1089.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1085.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1082.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1065.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1059.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1044.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1032.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1027.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1012.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1001.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 994.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 993.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 987.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 983.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 977.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 962.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 946.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 938.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 933.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 927.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 910.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 907.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 889.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 886.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 886.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 872.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 869.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 865.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 855.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 848.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 840.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 837.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 830.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 828.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 796.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 792.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 776.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 774.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 761.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 757.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 752.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 751.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 720.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 717.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 716.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 711.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 703.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 680.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 661.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 645.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 632.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 629.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 618.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 606.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 603.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 602.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 602.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 601.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 593.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 590.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 589.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 585.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 585.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 584.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 580.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 562.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 561.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 551.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 545.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 545.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 540.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 531.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 505.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 499.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 466.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 465.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 462.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 459.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 457.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 451.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 440.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 438.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 431.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 421.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 412.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 399.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 398.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 394.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 383.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 375.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 371.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 355.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 339.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 328.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1794.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1794.2
FF:10151-102I7 76 years, female 1794.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 169.9
Pig sample Sample description nTPM
Amygdala
nTPM: 169.9
Samples: 4

Max nTPM: 230.1
Min nTPM: 120.5
Sample A Female 173.0
Sample B Female 230.1
Sample C Male 155.8
Sample D Male 120.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 148.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 148.2
Samples: 4

Max nTPM: 214.9
Min nTPM: 117.4
Sample A Male 117.4
Sample B Male 124.8
Sample C Female 214.9
Sample D Female 135.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.7
72182998 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 6.7
74357575 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 5.1

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