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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:3215.2 nTPM
HPA:3215.2 nTPM
FANTOM5:4873.5 Scaled Tags Per Million
Pig:692.9 nTPM
Allen mouse:11.2 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 3215.2
Sample id Sample description nTPM
Area postrema
nTPM: 2747.3
2306 Male, age 80, both hemispheres 3061.2
2799 Male, age 61, both hemispheres 2821.8
2054 Male, age 76, both hemispheres 2358.9
Cuneate nuclei
nTPM: 2649.1
2381 Male, age 80, both hemispheres 2912.8
2376 Male, age 61, both hemispheres 2672.5
2131 Male, age 76, both hemispheres 2361.9
Dorsal medullary reticular nucleus
nTPM: 2493.2
2040 Female, age 85, both hemispheres 2633.2
2373 Male, age 61, both hemispheres 2466.9
2088 Male, age 76, both hemispheres 2379.7
Dorsal motor vagal complex
nTPM: 2415.9
2185 Male, age 76, both hemispheres 2547.5
2000 Male, age 74, unknown 2503.0
2133 Female, age 91, both hemispheres 2462.3
2807 Female, age 85, both hemispheres 2421.2
2813 Female, age 72, unknown 2355.0
2643 Male, age 74, both hemispheres 2353.5
2797 Male, age 61, both hemispheres 2349.2
2844 Male, age 55, unknown 2336.0
Gigantocellular reticular nuclei, medullary
nTPM: 2747.3
2314 Male, age 61, both hemispheres 3127.7
2387 Female, age 91, both hemispheres 2888.5
1876 Female, age 85, both hemispheres 2779.1
2310 Male, age 80, both hemispheres 2769.9
2462 Male, age 74, both hemispheres 2495.9
2022 Male, age 76, right hemisphere 2422.4
Gigantocellular reticular nuclei, pars
nTPM: 2637.9
2706 Male, age 80, both hemispheres 2800.1
2330 Male, age 80, both hemispheres 2784.1
2336 Male, age 61, both hemispheres 2666.3
2084 Female, age 85, both hemispheres 2561.5
2168 Male, age 76, both hemispheres 2377.6
Inferior olive
nTPM: 2931.6
2628 Female, age 91, both hemispheres 3095.2
2178 Male, age 61, both hemispheres 2944.3
2085 Female, age 85, both hemispheres 2914.2
2563 Male, age 74, both hemispheres 2896.7
2379 Male, age 80, both hemispheres 2807.6
Lateral medullary reticular nucleus
nTPM: 2967.9
2852 Male, age 80, both hemispheres 3313.7
2305 Male, age 74, both hemispheres 3212.1
2374 Male, age 61, both hemispheres 2955.4
2190 Female, age 85, both hemispheres 2930.3
2804 Female, age 91, both hemispheres 2783.3
2044 Male, age 76, both hemispheres 2612.8
Medial vestibular nucleus
nTPM: 2682.3
2624 Male, age 61, both hemispheres 2918.1
2801 Male, age 74, both hemispheres 2868.9
2803 Female, age 91, both hemispheres 2852.3
2093 Male, age 80, both hemispheres 2760.0
2743 Female, age 85, both hemispheres 2383.3
2134 Male, age 76, both hemispheres 2311.2
Motor hypoglossal nucleus
nTPM: 2633.3
2182 Male, age 80, both hemispheres 2948.4
2132 Female, age 85, both hemispheres 2866.9
2125 Female, age 91, both hemispheres 2796.7
2461 Male, age 61, both hemispheres 2349.9
2277 Male, age 76, both hemispheres 2204.7
Nucleus ambiguus
nTPM: 2897.8
2071 Male, age 76, both hemispheres 3093.4
2096 Female, age 85, both hemispheres 2702.1
Nucleus cuneatus
nTPM: 2677.9
2808 Female, age 85, both hemispheres 3081.6
2380 Male, age 80, both hemispheres 3032.3
2564 Male, age 74, both hemispheres 2675.4
2100 Male, age 76, both hemispheres 2502.0
2805 Female, age 91, both hemispheres 2426.1
2562 Male, age 61, both hemispheres 2350.1
Nucleus gracilis
nTPM: 2931.8
2382 Male, age 80, both hemispheres 3225.3
2627 Male, age 74, both hemispheres 2960.8
2299 Female, age 85, both hemispheres 2609.2
Nucleus raphe magnus
nTPM: 2595.3
2459 Female, age 91, both hemispheres 2789.6
2328 Male, age 80, both hemispheres 2779.7
2051 Male, age 76, both hemispheres 2736.9
2455 Male, age 74, both hemispheres 2574.2
2172 Female, age 85, both hemispheres 2378.0
2160 Male, age 61, both hemispheres 2313.5
Nucleus raphe obscurus
nTPM: 3215.2
2142 Male, age 76, midline 3373.6
2845 Female, age 85, midline 3363.2
2800 Male, age 61, midline 2908.8
Nucleus raphe pallidus
nTPM: 2969.6
1924 Male, age 61, midline 3122.0
2145 Male, age 76, midline 3018.6
2183 Male, age 80, midline 2768.3
Nucleus tractus solitarii
nTPM: 2228.0
2307 Male, age 80, both hemispheres 2299.4
2144 Female, age 91, right hemisphere 2218.8
2191 Female, age 85, both hemispheres 2217.5
2656 Male, age 76, both hemispheres 2176.3
Parvicellular reticular nuclei
nTPM: 2662.2
2119 Male, age 80, both hemispheres 2853.9
2095 Male, age 76, both hemispheres 2657.4
2558 Male, age 74, both hemispheres 2475.2
Parvicellular reticular nuclei, medullary
nTPM: 2547.0
2189 Female, age 91, both hemispheres 2671.5
2181 Male, age 80, left hemisphere 2499.0
2091 Female, age 85, both hemispheres 2470.3
Peritrigeminal nucleus
nTPM: 2798.7
2067 Female, age 85, both hemispheres 2866.7
2136 Male, age 76, both hemispheres 2859.1
2179 Male, age 61, both hemispheres 2670.2
Prepositus hypoglossal nucleus
nTPM: 2542.9
2855 Female, age 85, right hemisphere 2741.7
2086 Male, age 80, both hemispheres 2344.2
Spinal trigeminal nucleus, caudal
nTPM: 2644.9
2308 Male, age 80, both hemispheres 2871.8
2312 Male, age 61, both hemispheres 2815.9
2390 Female, age 91, both hemispheres 2609.1
2642 Male, age 74, both hemispheres 2531.2
2447 Male, age 76, both hemispheres 2396.6
Spinal trigeminal nucleus, interpolar
nTPM: 2533.1
2389 Female, age 91, both hemispheres 2641.8
2033 Male, age 80, both hemispheres 2584.3
2386 Female, age 85, both hemispheres 2530.6
2625 Male, age 61, both hemispheres 2502.7
2066 Male, age 76, right hemisphere 2406.3
Spinal vestibular nucleus
nTPM: 2626.7
2806 Female, age 85, both hemispheres 2781.3
2186 Female, age 91, both hemispheres 2674.5
2780 Male, age 80, both hemispheres 2616.2
2748 Male, age 76, both hemispheres 2610.2
2384 Male, age 74, both hemispheres 2539.3
2796 Male, age 61, both hemispheres 2539.0
Ventral medullary reticular nucleus
nTPM: 2581.4
2372 Male, age 61, both hemispheres 2673.1
2060 Male, age 76, both hemispheres 2489.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 2780.5
2118 Male, age 80, both hemispheres 2944.7
2180 Male, age 61, both hemispheres 2799.2
1986 Male, age 76, both hemispheres 2782.8
2302 Female, age 91, both hemispheres 2761.2
2741 Female, age 85, both hemispheres 2614.4

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 4873.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 4873.5
FF:10038-101F2 18-64 years, mixed 6680.0
FF:10155-103A2 76 years, female 4115.9
FF:10174-103C3 60 years, female 3824.7

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 692.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 692.9
Samples: 4

Max nTPM: 908.1
Min nTPM: 447.8
Sample A Female 692.5
Sample B Female 447.8
Sample C Male 723.0
Sample D Male 908.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 11.2
72182998 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 11.2
74357575 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 11.1

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