MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2856.7 nTPM
HPA:2856.7 nTPM
GTEx:2608.4 nTPM
FANTOM5:9346.2 Scaled Tags Per Million
Pig:649.1 nTPM
Mouse:371.7 nTPM
Allen mouse:12.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2856.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2655.5
1870 Female, age 42, unknown 2898.7
2666 Male, age 74, left hemisphere 2890.1
1830 Male, age 51, unknown 2839.0
2411 Female, age 72, unknown 2820.8
1833 Male, age 53, unknown 2819.4
2019 Male, age 18, unknown 2688.0
2828 Female, age 72, unknown 2638.6
1827 Male, age 72, unknown 2391.1
2219 Male, age 76, both hemispheres 2353.4
2586 Male, age 75, left hemisphere 2216.4
Dorsal raphe nucleus
nTPM: 2383.0
2750 Male, age 76, both hemispheres 2624.3
2016 Female, age 72, unknown 2443.9
1828 Male, age 53, unknown 2407.9
2298 Female, age 72, unknown 2236.9
2047 Male, age 72, unknown 2202.1
Inferior colliculus
nTPM: 2340.5
1848 Female, age 42, unknown 2387.3
2849 Male, age 72, unknown 2350.4
1890 Male, age 53, unknown 2337.2
2097 Female, age 72, unknown 2287.3
Median raphe nucleus
nTPM: 2497.3
2220 Male, age 76, midline 2497.3
Pedunculopontine tegmental nucleus
nTPM: 2641.9
2338 Male, age 61, both hemispheres 2788.2
2334 Male, age 80, both hemispheres 2696.4
1921 Female, age 85, both hemispheres 2441.1
Periaquaductal grey, anterior
nTPM: 2253.7
1947 Male, age 18, unknown 2342.2
1795 Male, age 51, unknown 2230.5
2502 Female, age 75, unknown 2188.6
Periaquaductal grey, dorsal
nTPM: 2264.1
2464 Female, age 72, unknown 2347.6
2850 Male, age 76, both hemispheres 2321.3
1831 Male, age 72, unknown 2313.2
1840 Male, age 53, unknown 2074.4
Periaquaductal grey, lateral
nTPM: 2323.0
2053 Male, age 18, unknown 2339.1
2272 Male, age 74, both hemispheres 2322.8
2140 Male, age 76, both hemispheres 2307.0
Pretectal area
nTPM: 2373.9
1815 Male, age 53, unknown 2567.1
1817 Female, age 42, unknown 2489.2
2316 Male, age 76, right hemisphere 2412.3
2667 Female, age 75, unknown 2411.7
2273 Male, age 74, both hemispheres 2390.0
2407 Male, age 75, both hemispheres 2383.2
2825 Male, age 18, unknown 2370.0
2007 Male, age 72, unknown 2333.6
2224 Female, age 72, unknown 2318.9
1944 Female, age 72, unknown 2254.7
1816 Male, age 51, unknown 2181.8
Red nucleus
nTPM: 2856.7
1821 Female, age 72, unknown 3136.6
1904 Male, age 53, unknown 3091.6
1865 Male, age 51, unknown 3075.6
1954 Female, age 42, unknown 2970.6
2227 Male, age 72, unknown 2968.6
2503 Female, age 72, unknown 2950.5
2769 Male, age 72, unknown 2942.3
2785 Male, age 18, unknown 2854.7
2823 Male, age 76, right hemisphere 2844.6
2725 Female, age 75, unknown 2535.4
2588 Male, age 74, left hemisphere 2498.5
2584 Male, age 75, left hemisphere 2410.7
Substantia nigra
nTPM: 2427.9
2409 Female, age 72, unknown 2568.9
1851 Male, age 51, unknown 2549.1
1889 Female, age 72, unknown 2532.8
2699 Male, age 18, unknown 2490.4
2583 Male, age 75, right hemisphere 2433.0
2590 Female, age 75, unknown 2397.5
1941 Male, age 53, unknown 2387.8
2241 Male, age 72, unknown 2365.2
1916 Female, age 42, unknown 2332.0
2665 Male, age 74, both hemispheres 2222.4
Superior colliculus
nTPM: 2516.3
1913 Female, age 42, unknown 2889.6
2668 Female, age 75, unknown 2836.2
1995 Male, age 72, unknown 2812.0
2587 Male, age 74, left hemisphere 2621.9
1839 Male, age 51, unknown 2485.9
1796 Male, age 53, unknown 2427.1
1895 Male, age 76, right hemisphere 2324.2
2087 Female, age 72, unknown 2299.0
2664 Male, age 75, both hemispheres 2243.6
2261 Male, age 18, unknown 2223.7
Ventral tegmental area
nTPM: 2588.2
2223 Female, age 72, unknown 3032.7
2410 Female, age 72, unknown 2666.9
1915 Female, age 42, unknown 2491.4
2218 Male, age 76, both hemispheres 2462.6
2021 Male, age 53, unknown 2452.7
1942 Male, age 51, unknown 2422.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2608.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2608.4
Samples: 139

Max nTPM: 8387.2
Min nTPM: 733.4
Std nTPM: 1625.6
Median nTPM: 2140.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 8387.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 8216.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 8041.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 7445.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 7383.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 6451.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6366.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 6346.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 5845.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 5677.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5651.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9346.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9346.2
FF:10158-103A5 76 years, female 9346.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 649.1
Pig sample Sample description nTPM
Midbrain
nTPM: 649.1
Samples: 4

Max nTPM: 1526.7
Min nTPM: 278.6
Sample A Female 1526.7
Sample B Female 493.8
Sample C Male 297.1
Sample D Male 278.6
Periaqueductal gray
nTPM: 352.8
Samples: 3

Max nTPM: 396.3
Min nTPM: 284.2
Sample B Female 378.0
Sample C Male 284.2
Sample D Male 396.3
Substantia nigra
nTPM: 541.4
Samples: 4

Max nTPM: 836.0
Min nTPM: 371.2
Sample A Female 576.8
Sample B Female 371.2
Sample C Male 381.4
Sample D Male 836.0
Superior colliculi
nTPM: 496.9
Samples: 4

Max nTPM: 612.2
Min nTPM: 292.6
Sample A Female 612.2
Sample B Female 292.6
Sample C Male 511.1
Sample D Male 571.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 371.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 371.7
Samples: 4

Max nTPM: 404.1
Min nTPM: 339.8
Sample A Male 355.0
Sample B Male 339.8
Sample C Female 387.8
Sample D Female 404.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.2
72182998 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 12.2
74357575 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 10.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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