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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Eyei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Lens fiber cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:478.7 nTPM
GTEx:478.7 nTPM
FANTOM5:1581.1 Scaled Tags Per Million
Pig:74.3 nTPM
Mouse:6566.6 nTPM

EYE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody CAB002053
Corneal epithelial cells Not detected
Lens epithelial cells Not detected
Lens fiber cells High

EYE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody CAB040560
Corneal epithelial cells Not detected
Lens epithelial cells Not detected
Lens fiber cells High

EYE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA057100
Corneal epithelial cells Not detected
Hyaloid membrane Not detected
Lens epithelial cells Not detected
Lens fiber cells High

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 478.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 478.7
Samples: 105

Max nTPM: 1496.9
Min nTPM: 130.6
Std nTPM: 276.6
Median nTPM:
41_1 94 years, female 1496.9
173_1 67 years, male 1184.0
137_1 83 years, male 1167.7
394_1 75 years, female 1153.4
99_1 64 years, male 1149.4
308_1 70 years, female 1054.1
315_1 62 years, female 1006.8
295_1 61 years, female 965.8
317_1 60 years, male 952.6
452_1 88 years, female 945.5
379_1 60 years, male 931.6
384_1 83 years, male 885.8
354_1 81 years, female 827.1
351_1 91 years, male 808.9
447_1 81 years, male 780.0
120_1 70 years, female 768.2
17_1 71 years, male 755.4
42_1 85 years, male 695.1
139_1 64 years, female 685.7
288_1 66 years, female 685.2
218_1 71 years, female 677.3
495_1 57 years, female 676.6
349_1 83 years, male 659.0
35_1 74 years, female 646.1
389_1 86 years, female 621.9
319_1 81 years, male 621.8
322_1 76 years, male 618.2
307_1 66 years, female 614.0
4_1 88 years, female 605.9
353_1 82 years, female 572.1
264_1 73 years, female 555.3
237_1 82 years, male 546.9
145_1 84 years, male 545.1
119_1 70 years, female 540.8
491_1 89 years, female 518.3
347_1 72 years, male 517.1
6_1 73 years, female 502.8
89_1 63 years, male 484.6
350_1 84 years, female 483.5
375_1 74 years, female 482.2
243_1 75 years, male 481.7
117_1 61 years, male 480.2
291_1 76 years, male 473.6
2_1 77 years, female 471.8
311_1 78 years, male 465.1
254_1 77 years, female 454.9
386_1 76 years, male 447.7
501_1 88 years, male 445.2
189_1 76 years, male 444.6
313_1 79 years, female 427.3
335_1 73 years, female 424.2
162_1 79 years, female 420.2
18_1 88 years, male 416.3
265_1 87 years, male 414.1
320_1 89 years, female 406.2
314_1 67 years, male 400.9
518_1 75 years, female 388.3
348_1 84 years, male 379.6
526_1 61 years, male 379.3
251_1 78 years, male 372.1
318_1 68 years, male 368.8
286_1 68 years, female 365.5
109_1 81 years, female 358.4
376_1 75 years, female 352.3
324_1 76 years, male 351.8
406_1 79 years, male 337.6
321_1 62 years, female 318.3
517_1 88 years, male 309.8
43_1 64 years, female 303.5
506_1 65 years, male 297.4
352_1 62 years, male 296.5
414_1 84 years, female 292.7
355_1 70 years, female 291.9
9_1 66 years, female 291.5
316_1 62 years, male 282.7
396_1 62 years, male 279.5
415_1 77 years, female 277.7
115_1 83 years, male 274.1
490_1 67 years, female 269.9
266_1 85 years, male 264.9
172_1 72 years, female 259.9
503_1 68 years, male 254.4
405_1 91 years, male 252.0
466_1 57 years, female 244.5
404_1 82 years, female 234.6
499_1 55 years, female 232.6
229_1 69 years, female 231.6
377_1 82 years, female 227.7
413_1 59 years, female 224.0
153_1 70 years, female 223.8
177_1 74 years, male 220.1
292_1 71 years, male 213.5
142_1 61 years, female 205.8
217_1 76 years, male 204.0
163_1 78 years, male 197.7
356_1 87 years, female 196.5
81_1 67 years, male 185.1
480_1 63 years, male 183.0
293_1 68 years, female 178.5
425_1 59 years, female 173.7
468_1 89 years, male 160.7
126_1 63 years, male 159.3
246_1 77 years, male 155.2
32_1 67 years, male 151.3
149_1 88 years, male 130.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1581.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 1581.1
FF:10030-101E3 24-65 years, mixed 1581.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 74.3
Pig sample Sample description nTPM
Retina
nTPM: 74.3
Samples: 4

Max nTPM: 118.9
Min nTPM: 56.0
Sample A Female 56.0
Sample B Female 61.3
Sample C Male 118.9
Sample D Male 61.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6566.6
Mouse sample Sample description nTPM
Retina
nTPM: 6566.6
Samples: 4

Max nTPM: 20289.9
Min nTPM: 176.6
Sample A Male 5364.0
Sample B Male 435.9
Sample C Female 176.6
Sample D Female 20289.9

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