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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2815.5 nTPM
HPA:2815.5 nTPM
FANTOM5:6712.3 Scaled Tags Per Million
Pig:497.9 nTPM
Mouse:438.6 nTPM
Allen mouse:11.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 2815.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 2564.4
2396 Male, age 61, right hemisphere 2719.4
2032 Female, age 42, unknown 2572.7
2497 Male, age 66, unknown 2401.1
Centromedial thalamic nucleus
nTPM: 2675.3
2279 Female, age 85, left hemisphere 2920.4
2401 Male, age 76, right hemisphere 2430.1
Habenula
nTPM: 2267.5
2203 Male, age 61, left hemisphere 2467.9
2252 Male, age 62, unknown 2230.8
1957 Male, age 80, both hemispheres 2223.0
2276 Male, age 66, unknown 2148.3
Lateral geniculate body
nTPM: 2660.3
2841 Male, age 80, both hemispheres 3251.6
2575 Female, age 94, right hemisphere 2700.1
2035 Female, age 72, unknown 2634.4
2399 Male, age 61, left hemisphere 2630.5
2659 Male, age 66, unknown 2612.2
1953 Male, age 62, unknown 2591.0
2106 Female, age 67, right hemisphere 2559.1
2857 Male, age 74, right hemisphere 2303.4
Lateral thalamic nuclei
nTPM: 2692.0
2577 Male, age 74, both hemispheres 2975.7
2765 Female, age 67, both hemispheres 2897.7
2573 Female, age 94, left hemisphere 2717.9
2661 Female, age 72, unknown 2531.2
1903 Male, age 76, left hemisphere 2337.3
Medial dorsal thalamic nucleus
nTPM: 2372.7
2660 Female, age 72, unknown 2667.5
2576 Male, age 74, both hemispheres 2527.4
1971 Male, age 61, right hemisphere 2486.4
1859 Male, age 76, both hemispheres 2486.3
2572 Female, age 94, right hemisphere 2392.1
1930 Female, age 42, unknown 2368.7
2402 Female, age 67, both hemispheres 2337.2
2492 Male, age 75, right hemisphere 2325.2
2283 Male, age 80, right hemisphere 2290.2
1810 Male, age 48, unknown 2287.5
2026 Male, age 62, unknown 2268.0
2039 Female, age 72, unknown 2207.3
2498 Male, age 66, unknown 2201.7
Medial geniculate body
nTPM: 2413.9
2217 Female, age 72, unknown 2564.4
2207 Male, age 80, right hemisphere 2536.7
2049 Male, age 76, both hemispheres 2460.2
2650 Female, age 94, left hemisphere 2423.6
2657 Male, age 74, right hemisphere 2396.7
2571 Male, age 75, right hemisphere 2312.6
1811 Female, age 42, unknown 2203.4
Nucleus reuniens
nTPM: 2790.8
2210 Female, age 85, left hemisphere 3258.2
2205 Male, age 80, left hemisphere 2732.9
2212 Female, age 67, left hemisphere 2381.1
Nucleus rhomboideus
nTPM: 2603.8
2280 Female, age 85, left hemisphere 3096.9
2213 Female, age 67, left hemisphere 2412.7
2206 Male, age 80, both hemispheres 2301.8
Posterior thalamic nucleus
nTPM: 2413.5
2266 Male, age 76, right hemisphere 2897.8
2649 Female, age 94, both hemispheres 2352.2
2495 Female, age 67, right hemisphere 2222.9
2655 Male, age 74, right hemisphere 2181.2
Pulvinar
nTPM: 2494.5
2214 Male, age 76, right hemisphere 2695.6
2398 Male, age 61, left hemisphere 2671.8
1932 Male, age 80, right hemisphere 2641.2
1899 Female, age 42, unknown 2512.4
1972 Male, age 62, unknown 2483.1
1929 Male, age 48, unknown 2423.5
2724 Male, age 74, right hemisphere 2422.7
2582 Female, age 72, unknown 2397.6
2499 Male, age 66, unknown 2388.4
2496 Female, age 67, right hemisphere 2309.1
Subthalamic nucleus
nTPM: 2815.5
2282 Male, age 61, both hemispheres 3090.3
2124 Male, age 62, unknown 3079.3
2056 Female, age 72, unknown 3029.3
2216 Male, age 48, unknown 2995.7
2275 Male, age 66, unknown 2908.6
2658 Male, age 74, both hemispheres 2679.1
2779 Female, age 42, unknown 2601.9
2406 Female, age 72, unknown 2139.6
Ventral posterolateral thalamic nucleus
nTPM: 2538.7
2578 Male, age 74, both hemispheres 2875.9
2397 Male, age 61, right hemisphere 2689.5
2740 Male, age 76, right hemisphere 2492.0
2581 Female, age 72, unknown 2462.4
2570 Male, age 75, right hemisphere 2411.0
2197 Male, age 80, both hemispheres 2301.2
Ventral posteromedial thalamic nucleus
nTPM: 2597.7
2653 Male, age 74, both hemispheres 2944.6
2127 Male, age 76, right hemisphere 2644.5
2202 Male, age 61, left hemisphere 2616.0
2281 Male, age 75, right hemisphere 2536.8
2758 Male, age 80, both hemispheres 2246.9
Ventral thalamic nuclei
nTPM: 2664.5
2652 Male, age 74, left hemisphere 2849.3
2580 Male, age 66, unknown 2818.7
2291 Female, age 72, unknown 2812.8
2858 Female, age 72, unknown 2714.0
1860 Male, age 76, both hemispheres 2691.9
1845 Male, age 48, unknown 2641.7
2204 Male, age 80, both hemispheres 2621.3
2285 Male, age 62, unknown 2446.6
1912 Female, age 42, unknown 2384.0
Ventromedial nucleus
nTPM: 1985.6
1982 Female, age 72, unknown 2008.9
1822 Female, age 42, unknown 1962.2
Zona incerta
nTPM: 2652.4
2215 Male, age 66, unknown 3114.8
2822 Male, age 74, right hemisphere 2791.3
2403 Male, age 62, unknown 2565.7
2663 Female, age 72, unknown 2436.4
2208 Male, age 80, right hemisphere 2354.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 6712.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 6712.3
FF:10154-103A1 76 years, female 6712.3

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 497.9
Pig sample Sample description nTPM
Thalamus
nTPM: 497.9
Samples: 4

Max nTPM: 1039.0
Min nTPM: 308.3
Sample A Female 308.3
Sample B Female 325.2
Sample C Male 318.9
Sample D Male 1039.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 438.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 438.6
Samples: 4

Max nTPM: 517.2
Min nTPM: 379.5
Sample A Male 379.5
Sample B Male 417.3
Sample C Female 517.2
Sample D Female 440.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 11.6
72182998 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 11.6
74357575 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 8.7

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