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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2877.3 nTPM
HPA:2877.3 nTPM
GTEx:4567.1 nTPM
FANTOM5:8301.4 Scaled Tags Per Million
Pig:804.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 2877.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2778.5
1981 Female, age 72, midline 3134.2
2048 Male, age 55, midline 2887.8
2816 Male, age 47, midline 2789.2
2194 Female, age 79, both hemispheres 2662.0
2565 Male, age 75, midline 2419.1
Cervical spinal cord, dorsal horn
nTPM: 2877.3
2296 Male, age 66, both hemispheres 3660.4
2173 Female, age 72, unknown 3525.6
2069 Male, age 47, both hemispheres 2753.7
1877 Male, age 55, unknown 2664.8
2721 Male, age 90, both hemispheres 2386.5
2297 Male, age 75, both hemispheres 2272.7
Cervical spinal cord, ventral horn
nTPM: 2819.5
2098 Female, age 72, unknown 3357.2
2068 Male, age 55, unknown 2893.1
2809 Male, age 90, both hemispheres 2786.6
2820 Female, age 79, both hemispheres 2715.6
2295 Male, age 66, both hemispheres 2603.3
2480 Male, age 75, both hemispheres 2561.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4567.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 4567.1
Samples: 159

Max nTPM: 11861.2
Min nTPM: 1044.7
Std nTPM: 1696.7
Median nTPM: 4522.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 11861.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 10443.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 9754.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 9241.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 9157.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 8388.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 8053.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 7453.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 7195.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 7173.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 7105.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 6756.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 6744.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 6709.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 6628.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 6321.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 6296.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 6263.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 6150.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 6062.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 5962.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 5939.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 5892.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 5871.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 5858.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 5852.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 5850.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 5816.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 5760.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 5738.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 5737.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 5718.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 5605.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 5584.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 5552.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 5552.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 5482.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 5469.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 5418.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 5413.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 5372.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 5334.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 5331.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 5323.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 5294.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 5265.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 5250.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 5240.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 5208.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 5203.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 5146.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 5131.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 5074.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 5045.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 5031.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 5017.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 4982.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 4975.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 4909.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 4907.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 4900.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 4873.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 4859.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 4847.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 4840.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 4840.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 4786.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 4778.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 4724.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 4695.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 4678.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 4633.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 4631.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 4624.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 4612.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 4588.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 4588.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 4579.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 4549.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 4522.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 4501.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 4481.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 4438.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 4371.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 4353.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 4324.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 4271.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 4267.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 4239.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 4149.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 4123.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 4115.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 4078.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 4076.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 4056.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 4047.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 4035.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 4027.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 4004.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 4001.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 3950.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 3908.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 3881.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 3872.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 3858.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 3820.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 3817.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 3813.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 3808.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 3754.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 3717.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3700.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 3683.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 3682.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 3681.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 3667.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 3586.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 3576.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 3496.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 3485.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 3485.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 3473.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 3407.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 3274.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 3258.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 3244.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 3235.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 3220.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 3215.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 3190.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 3078.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 3028.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 2987.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 2981.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 2890.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2888.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 2887.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2801.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 2794.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 2767.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2717.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 2696.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 2668.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 2579.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 2559.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2507.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 2377.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 2245.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 2170.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 2145.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 2024.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1977.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1968.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1793.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1767.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1762.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1686.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1588.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1044.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 8301.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 8301.4
FF:10159-103A6 76 years, female 9483.1
FF:10181-103D1 60 years, female 7119.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 804.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 796.7
Samples: 4

Max nTPM: 964.2
Min nTPM: 654.0
Sample A Female 654.0
Sample B Female 851.1
Sample C Male 964.2
Sample D Male 717.4
Ventral spinal cord
nTPM: 804.4
Samples: 4

Max nTPM: 817.8
Min nTPM: 794.0
Sample A Female 797.2
Sample B Female 794.0
Sample C Male 808.6
Sample D Male 817.8

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